Plant FIBer expression Database

Potri.011G137700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G27020 894 / 0 unknown protein
AT5G54870 858 / 0 unknown protein
AT1G70160 738 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G424500
[exp]
999 / 0 AT4G27020 879 / 0.0 unknown protein
Potri.010G036900
[exp]
748 / 0 AT1G70160 852 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040054
[exp]
904 / 0 AT4G27020 868 / 0.0 unknown protein
Lus10032644
[exp]
889 / 0 AT4G27020 868 / 0.0 unknown protein
Lus10043107
[exp]
872 / 0 AT4G27020 849 / 0.0 unknown protein
Lus10010721
[exp]
754 / 0 AT1G70160 880 / 0.0 unknown protein
Lus10029209
[exp]
747 / 0 AT1G70160 872 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G137700.1 pacid=42781719 polypeptide=Potri.011G137700.1.p locus=Potri.011G137700 ID=Potri.011G137700.1.v4.1 annot-version=v4.1
ATGGAGCCATCTTTCTCTTTGAAAACAATACTAACAATCTCCCTCTTTCTCTTCTTTCTCACCCCGCAATCATCTTTAGCTATAAAAGTACCCTTCCACC
CTCAGGACTTGCTTCCTTTGTTACCAAGGCAAGTCTCATGGCCAATTCTCAACTACTTAAACGGTGCAGTGGACCTTTTGCCAACATTTGTTGGTGCTGC
CTCTGCTTTAAACGACACCGGTGAGTGGAAAGGTGCTTGCTTTTACGAGAATCGGGCTTGGATGGAGTTTCATAATAAGACTGGTAGTGAATTTGGTGGC
GGTACACTTCATCTTAAGGTTAGTAAAGCTCACAGCTGGACATGTATGGATATTTATGTCTTTGCCACTCCCTATCGTGTAACATGGGATTATTACTTTT
TATCTCGAGAACATACATTAGAGTTTAAAGAGTGGGATAGCAAAGCTGAATATGAATATGTGAAACGCCAGGGAGTCTCAATTTTCCTCATGCAGGCAGG
GATGCTTGGAACCCTTTCAGCACTATGGGATGTCTTTCCCTTATTTACAAATACTGGATGGGGAGAGAATTCTAATATTGGATTCCTGAAGAAACATATG
GGGGCTACCTTTGAACAGCGTCCGCAGCCTTGGGTTAACAACATCAGTGTTGATGATATTCACTCTGGTGACTTCCTTGCTATATCAAAAATTCGTGGAA
GGTGGGGTGGTTTTGAGACTTTAGAGAAGTGGGTTAGTGGAGCTTATGCTGGTCATAGTGCTGTTTGCTTAAAGGATTCTGAAGGAAAATTATGGGTTGG
TGAATCGGGACATGAAAATGAACAGGGAGAAGATATTATTGCTGTGTTACCTTGGGATGAATGGTGGGAATTCGAGCTGAATAAGGATGACTCAAATCCA
CATATTGCATTGCTTCCTCTGCACCCTGATGTGCGAGCTAAGTTCAATGAGACTGCTGCTTGGGAGTATGCTTTGAGCATGAATGGAAAGCCTTATGGAT
ATCATAACATGATATTTAGCTGGATAGACACTCTGGATGGGAACTATCCACCTCCATTGGATTCTCATGTGGTTGCTTCTGTTATGACAGTTTGGAATCA
CATGCAACCTGAATATGCTGCTAACATGTGGAATGAAGCCTTGAACAAACGACTTGGAACTCAGGGCCTTGATCTTCCTGATGTCTTGGTAGAAGTTGAA
AAGCGTGGGTCATCCTTTGGGGAATTGCTGACAATTCCTGAACAGGATGATTGGTTGTATGCTGATGGGAAGTCAACCTCGTGTATTGCTTTTGTTCTGG
AAATGTACAAGGAAGCAGGACTGTTTGATCCAATTTCTGGCTCTGTACAAGTGACTGAATTTACGATCAAAGATGCCTACACACTAAGGTTTTTTGAAAA
CAATTCAAGCCGCTTGCCAAAGTGGTGCAATGATGGAGATGATGTGAAGCTCCCATTTTGTCAGATCAAAGGGAAGTATCGAATGGAACTACCAGAATAC
AATACCATGGATCCTTACCCCCATATGAACGAAAGGTGCCCATCACTCCCCCCAAAATACTACAGAACACAGAATTGCTAA
AA sequence
>Potri.011G137700.1 pacid=42781719 polypeptide=Potri.011G137700.1.p locus=Potri.011G137700 ID=Potri.011G137700.1.v4.1 annot-version=v4.1
MEPSFSLKTILTISLFLFFLTPQSSLAIKVPFHPQDLLPLLPRQVSWPILNYLNGAVDLLPTFVGAASALNDTGEWKGACFYENRAWMEFHNKTGSEFGG
GTLHLKVSKAHSWTCMDIYVFATPYRVTWDYYFLSREHTLEFKEWDSKAEYEYVKRQGVSIFLMQAGMLGTLSALWDVFPLFTNTGWGENSNIGFLKKHM
GATFEQRPQPWVNNISVDDIHSGDFLAISKIRGRWGGFETLEKWVSGAYAGHSAVCLKDSEGKLWVGESGHENEQGEDIIAVLPWDEWWEFELNKDDSNP
HIALLPLHPDVRAKFNETAAWEYALSMNGKPYGYHNMIFSWIDTLDGNYPPPLDSHVVASVMTVWNHMQPEYAANMWNEALNKRLGTQGLDLPDVLVEVE
KRGSSFGELLTIPEQDDWLYADGKSTSCIAFVLEMYKEAGLFDPISGSVQVTEFTIKDAYTLRFFENNSSRLPKWCNDGDDVKLPFCQIKGKYRMELPEY
NTMDPYPHMNERCPSLPPKYYRTQNC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G27020 unknown protein Potri.011G137700
[exp]
0 1
AT2G47710 Adenine nucleotide alpha hydro... Potri.002G205275
[exp]
4.47 0.8682
Potri.018G123400
[exp]
6.92 0.8440
AT1G60680 AGD2 NAD(P)-linked oxidoreductase s... Potri.005G052400
[exp]
7.34 0.8347
AT4G24160 alpha/beta-Hydrolases superfam... Potri.002G027300
[exp]
8.48 0.8576
AT1G01360 PYL9, RCAR1 PYRABACTIN RESISTANCE 1-LIKE 9... Potri.002G169400
[exp]
8.77 0.8366
AT5G12200 PYD2 pyrimidine 2 (.1) Potri.001G273400
[exp]
9.48 0.8237
AT5G61530 small G protein family protein... Potri.004G233400
[exp]
11.40 0.8341
AT3G19553 Amino acid permease family pro... Potri.001G296100
[exp]
12.64 0.8526
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Potri.001G381700
[exp]
19.10 0.8444 Pt-SRG1.3
AT4G26180 Mitochondrial substrate carrie... Potri.006G153600
[exp]
19.89 0.8067

Potri.011G137700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.