Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20500 697 / 0 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 510 / 2e-180 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52810 485 / 2e-170 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52780 481 / 6e-169 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT5G34850 306 / 6e-100 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT4G36350 299 / 3e-97 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT1G56360 298 / 5e-97 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT3G07130 287 / 6e-92 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G16430 284 / 2e-91 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 279 / 3e-89 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423700 [exp] 785 / 0 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 498 / 2e-175 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.006G063700 [exp] 309 / 8e-101 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.004G160100 [exp] 303 / 2e-98 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G123700 [exp] 302 / 3e-98 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.005G233400 [exp] 300 / 9e-98 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 300 / 2e-97 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G024800 [exp] 299 / 5e-97 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.009G121200 [exp] 297 / 3e-96 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040079 [exp] 691 / 0 AT3G20500 686 / 0.0 purple acid phosphatase 18 (.1) Lus10019625 [exp] 679 / 0 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10017056 [exp] 490 / 2e-172 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021377 [exp] 488 / 1e-171 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10021378 [exp] 490 / 1e-166 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10021376 [exp] 469 / 3e-165 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10017059 [exp] 428 / 2e-148 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10017057 [exp] 319 / 3e-107 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2) Lus10008054 [exp] 321 / 2e-105 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1) Lus10039978 [exp] 320 / 1e-104 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0163 [poplar] [flax] PF14008 [poplar] [flax] Metallophos_C Iron/zinc purple acid phosphatase-like protein C CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G138200.1 pacid=42782442 polypeptide=Potri.011G138200.1.p locus=Potri.011G138200 ID=Potri.011G138200.1.v4.1 annot-version=v4.1 ATGGAGCCAAAACTGGTCTTAGCTTTGTTCCTGTTAATCTCTGCAACTGCTGCAAGTGAATACATTAGGCCTTCAACTCGAAAGAATCTTGATTTTTCAA GGCCTTCAAAGTCTTCTTCTCATCCCCAACAGGTGCACATCTCTTTGGCTGGAGACAAGCACATGCGAGTCTCATGGGTCACTGATGATAAATCTGCTGC ATCAATGGTGGAATATGGAACTTCTCCTGGAAGATACAGCAATATAGCTCTAGGAGAGAGCACGTGGTATAGCTACCTATTTTATAGCTCTGGAAAGATA CACCACACAGTCATTGGACCACTGGAGGATAACGCGGTTTATTACTATCGATGTGGAGGAGGTGGTCCTGAGTACAAGCTCAAGACTCCTCCAGCTCAGT TCCCAGTTACTTTTGCTGTGGCTGGAGATTTAGGTCAAACTGGCTGGACTCAATCGACACTAGATCATATTGATCAATGCAAATATGATGTGCACCTGCT GCCCGGAGACCTTTCATATGCTGATTACATGCAGCACCTCTGGGACACATTTGGTGAGCTGGTTGAGCCACTTGCCAGCGCAAGACCTTGGATGGTAACA CAGGGGAATCATGAAAGAGAAAGCATTCCATTCCTCAAGGATGGTTTTGAACCCTACAATTCTAGATGGAAGATGCCATTTGAGGAGAGTGGGTCAAGTT CAAATCTTTATTATTCTTTCGAAGTTTCAGGGGCTCATATTATCATGCTTGGCTCATATACTGGTTATGATGAGTACTCCAATCAATATAACTGGCTCGA GGCTGATCTTGCCAAGGTGGACCGGAATAAGACACCTTGGCTGCTCGTACTATTCCATGTCCCATGGTACAATAGCAACGAGGCTCATCAAAATGAAGGG GACAGGATGATGGAAGCTATGGAGCCATTACTTTATGCTGCTAGTGTGGACATCGTGCTGGCTGGCCATGTTCATGCTTATGAACGCACGGAACGTGTAA ACAATGGAAAACTGGATCCATGTGGTGCTGTCCATATTACAATTGGAGATGGGGGAAACAGAGAGGGCTTAGCCCACAAATACAAAAACCCACAGCCAGC CTGGTCAGTCTTCCGTGAAGCAAGTTTTGGCCATGGTGAGCTCAAATTAGCAAATTCAACTCATGCCTTCTGGAGCTGGCATAGGAATGATGACGATGAG CCTGTTAGATCAGATCAGGTCTGGATAACTTCATTGGTGAATTCTGAATGCGTTGCTGAAAAGAAACATGGACTGAGGAAGATTCTAATGGGACCTTGA
AA sequence Show only first row Show all	>Potri.011G138200.1 pacid=42782442 polypeptide=Potri.011G138200.1.p locus=Potri.011G138200 ID=Potri.011G138200.1.v4.1 annot-version=v4.1 MEPKLVLALFLLISATAASEYIRPSTRKNLDFSRPSKSSSHPQQVHISLAGDKHMRVSWVTDDKSAASMVEYGTSPGRYSNIALGESTWYSYLFYSSGKI HHTVIGPLEDNAVYYYRCGGGGPEYKLKTPPAQFPVTFAVAGDLGQTGWTQSTLDHIDQCKYDVHLLPGDLSYADYMQHLWDTFGELVEPLASARPWMVT QGNHERESIPFLKDGFEPYNSRWKMPFEESGSSSNLYYSFEVSGAHIIMLGSYTGYDEYSNQYNWLEADLAKVDRNKTPWLLVLFHVPWYNSNEAHQNEG DRMMEAMEPLLYAASVDIVLAGHVHAYERTERVNNGKLDPCGAVHITIGDGGNREGLAHKYKNPQPAWSVFREASFGHGELKLANSTHAFWSWHRNDDDE PVRSDQVWITSLVNSECVAEKKHGLRKILMGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Potri.011G138200 [exp]	0	1
AT1G65770		AMR1	ascorbic acid mannose pathway ...		Potri.005G105400 [exp]	2.82	0.8902
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.016G038900 [exp]	4.47	0.9042
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.006G098200 [exp]	5.91	0.8717	Pt-HPT3.2
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	9.94	0.8674
AT3G10210			SEC14 cytosolic factor family ...		Potri.006G043166 [exp]	11.22	0.8401
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.003G203000 [exp]	11.48	0.8544
AT2G21620		RD2	Adenine nucleotide alpha hydro...		Potri.004G156200 [exp]	13.74	0.8688	Pt-RD2.2
AT1G03430		AHP5	histidine-containing phosphotr...		Potri.016G113500 [exp]	14.14	0.8754	HPT3.1
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.014G024950 [exp]	14.28	0.8474
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	16.49	0.8602

Compare expression of checked genes

Potri.011G138200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.