Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27000 463 / 2e-162 ATRBP45C RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54900 437 / 4e-153 ATRBP45A RNA-binding protein 45A (.1) AT1G11650 407 / 9e-141 ATRBP45B RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G19130 347 / 9e-117 ATRBP47B RNA-binding protein 47B (.1) AT1G47500 342 / 5e-115 ATRBP47C' RNA-binding protein 47C' (.1) AT1G49600 340 / 6e-114 ATRBP47A RNA-binding protein 47A (.1) AT1G47490 334 / 8e-112 ATRBP47C RNA-binding protein 47C (.1.2) AT5G19350 333 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G54080 132 / 3e-34 UBP1A oligouridylate-binding protein 1A (.1.2) AT1G17370 131 / 3e-34 UBP1B oligouridylate binding protein 1B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423400 [exp] 580 / 0 AT4G27000 474 / 2e-166 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.004G017200 [exp] 431 / 4e-150 AT1G11650 423 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G034600 [exp] 376 / 4e-128 AT1G47490 439 / 2e-152 RNA-binding protein 47C (.1.2) Potri.004G143400 [exp] 374 / 4e-127 AT3G19130 480 / 2e-168 RNA-binding protein 47B (.1) Potri.009G105300 [exp] 367 / 2e-124 AT3G19130 479 / 6e-168 RNA-binding protein 47B (.1) Potri.009G054400 [exp] 361 / 2e-122 AT5G19350 554 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G128100 [exp] 360 / 5e-122 AT1G47490 404 / 6e-139 RNA-binding protein 47C (.1.2) Potri.003G069000 [exp] 142 / 6e-38 AT1G17370 621 / 0.0 oligouridylate binding protein 1B (.1.2) Potri.001G166100 [exp] 139 / 6e-37 AT1G17370 622 / 0.0 oligouridylate binding protein 1B (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018345 [exp] 412 / 8e-143 AT1G11650 439 / 1e-153 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043106 [exp] 396 / 7e-136 AT4G27000 341 / 4e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10012070 [exp] 369 / 1e-125 AT1G49600 470 / 5e-165 RNA-binding protein 47A (.1) Lus10021754 [exp] 360 / 9e-122 AT1G47490 509 / 1e-179 RNA-binding protein 47C (.1.2) Lus10031844 [exp] 356 / 2e-120 AT5G19350 556 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10031277 [exp] 355 / 4e-120 AT5G19350 558 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012071 [exp] 351 / 8e-120 AT1G49600 442 / 2e-155 RNA-binding protein 47A (.1) Lus10014029 [exp] 342 / 4e-116 AT3G19130 455 / 1e-160 RNA-binding protein 47B (.1) Lus10019889 [exp] 332 / 4e-112 AT3G19130 450 / 1e-158 RNA-binding protein 47B (.1) Lus10027911 [exp] 327 / 1e-110 AT1G49600 411 / 3e-143 RNA-binding protein 47A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.011G138400.2 pacid=42782126 polypeptide=Potri.011G138400.2.p locus=Potri.011G138400 ID=Potri.011G138400.2.v4.1 annot-version=v4.1 ATGATGCAACAGCCCGGAGTCGCCGGAGTGGGGGCCCCACAACCAGATCAACAACAACAATACCAACAACAACAGCAGCAATGGATGATGCAGCAACAGC AACAATCGCAACCGGTGCCTCCTCCTGCTGGCTGGAATCCGCCGCCTGTTCCTCCTCCGACCCAGTACGGTGCAGCCGCCGGAAGTGGAGGAGATGGAGA CGAGATTAAGTCGTTGTGGATCGGGGATTTGCAGCAGTGGATGGATGAGAATTATCTTCTTAGCATCTTCTCTGCAACTGGAGAGATTGTTCAAGCTAAG GTTATTCGTAATAAGCAAACGGGTTATCCAGAGGGTTATGGTTTTATTGAGTTTGTAAGTCGTGCTGCAGCAGAGAGAATTTTGCAGACATACAATGGCA CACCAATGCCAAATAGTGAGCAGGCTTTCCGGCTGAACTGGGCAACCCTTGGTGCTGGTGAGAGGCGGCAAGATGATGGGCCTGATTTTACAGTTTTTGT TGGAGATTTGGCTGCTGATGTCAACGATTACCTTCTACAAGAAACATTTAGAAATGTGTACCCATCTGTGAAAGGTGCAAAAGTTGTTACTGATAGGGTC ACTGGACGTTCCAAGGGATATGGATTTATTAGGTTTGCTGATGAAAATGAACAAAGGCGTGCCATGGTTGAGATGAATGGACAATACTGCTCTACCAGGC CCATGCGGATTGGACCAGCTGCCACGAAGAAACCCTTGACCCAGCAGTATCAGAAAGCTACTTACCAGAATCCTCAAGGAAATCAGGGAGAGAATGATCC AAATAACACAACAATATTTGTCGGGGCCTTGGATCCAAGTGTGACTGATGACACTTTGAGAGCAGTGTTTAGTAAATATGGCGAGCTAGTGCACGTGAAA ATACCTGCAGGCAAGCGTTGTGGATTCGTTCAGTTTGCTAATCGAACTAGCGCGGAGCAAGCACTATCAATGTTGAACGGAACCCAGATAGCTGGTCAAA ATATCCGTCTCTCATGGGGCCGTAGTCCTTCTAACAAACAGGTTCAGCCAGATCAAAGCCAGTGGAATGGCGGTGGATATTATGGATATCCACAAGGATA TGATGCATATGGATATGCTGCTGCTGCTCCCCAAGACCCTAACATGTATTATGGAGGCTATCCTGGATATGGAAACTACCAGCAACCGGGAGCTTACCAA CAGCAACAGCAGTGA
AA sequence Show only first row Show all	>Potri.011G138400.2 pacid=42782126 polypeptide=Potri.011G138400.2.p locus=Potri.011G138400 ID=Potri.011G138400.2.v4.1 annot-version=v4.1 MMQQPGVAGVGAPQPDQQQQYQQQQQQWMMQQQQQSQPVPPPAGWNPPPVPPPTQYGAAAGSGGDGDEIKSLWIGDLQQWMDENYLLSIFSATGEIVQAK VIRNKQTGYPEGYGFIEFVSRAAAERILQTYNGTPMPNSEQAFRLNWATLGAGERRQDDGPDFTVFVGDLAADVNDYLLQETFRNVYPSVKGAKVVTDRV TGRSKGYGFIRFADENEQRRAMVEMNGQYCSTRPMRIGPAATKKPLTQQYQKATYQNPQGNQGENDPNNTTIFVGALDPSVTDDTLRAVFSKYGELVHVK IPAGKRCGFVQFANRTSAEQALSMLNGTQIAGQNIRLSWGRSPSNKQVQPDQSQWNGGGYYGYPQGYDAYGYAAAAPQDPNMYYGGYPGYGNYQQPGAYQ QQQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.011G138400 [exp]	0	1
					Potri.010G122150 [exp]	1.00	0.9329
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.012G057601 [exp]	2.00	0.9246
AT1G13980		VAN7, EMB30, GN	VASCULAR NETWORK 7, GNOM, EMBR...		Potri.017G078900 [exp]	5.29	0.8471	GN.1
					Potri.005G152000 [exp]	5.65	0.9070
AT3G25150			Nuclear transport factor 2 (NT...		Potri.002G246600 [exp]	6.32	0.8772
AT2G30280		RDM4, DMS4	DEFECTIVE IN MERISTEM SILENCIN...		Potri.019G126500 [exp]	11.00	0.8771
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.010G170050 [exp]	11.74	0.8489
AT1G29320			Transducin/WD40 repeat-like su...		Potri.012G095100 [exp]	14.83	0.8585
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	15.00	0.8619
AT2G27600		ATSKD1, VPS4, S...	VACUOLAR PROTEIN SORTING 4, SU...		Potri.009G144300 [exp]	15.23	0.7984

Compare expression of checked genes

Potri.011G138400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.