Plant FIBer expression Database

Potri.011G138600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54920 148 / 1e-38 unknown protein
AT4G26990 142 / 8e-37 unknown protein
AT3G14010 71 / 1e-12 CID4 CTC-interacting domain 4 (.1.2.3.4)
AT1G54170 63 / 3e-10 CID3 CTC-interacting domain 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G423200
[exp]
838 / 0 AT5G54920 253 / 3e-77 unknown protein
Potri.001G171100
[exp]
76 / 2e-14 AT3G14010 298 / 9e-93 CTC-interacting domain 4 (.1.2.3.4)
Potri.003G063000
[exp]
67 / 2e-11 AT3G14010 322 / 9e-102 CTC-interacting domain 4 (.1.2.3.4)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040755
[exp]
341 / 2e-111 AT5G54920 269 / 6e-84 unknown protein
Lus10016477
[exp]
321 / 2e-103 AT5G54920 271 / 5e-85 unknown protein
Lus10015638
[exp]
79 / 4e-15 AT3G14010 294 / 2e-92 CTC-interacting domain 4 (.1.2.3.4)
Lus10037656
[exp]
74 / 1e-13 AT3G14010 357 / 1e-114 CTC-interacting domain 4 (.1.2.3.4)
PFAM info
Representative CDS sequence
>Potri.011G138600.1 pacid=42781505 polypeptide=Potri.011G138600.1.p locus=Potri.011G138600 ID=Potri.011G138600.1.v4.1 annot-version=v4.1
ATGGGTTACAAAAACAGAGCAGAAGCTGAAACAGAGGCTTGCTTAAACGAGGCTTTATTGTTTGCTACTATGTGTATAATTGGACTCCCTGTTGATGTGC
ATATTAGAGATGGTTCTGTCTACTCTGGAACCTTTCACACTGCTTCTTTTGACAAGGAAAACGGTGTTGTTTTGAAGGAAGCAAGATTGACTAGGAAGGG
AAAATCTGATGCAAATGTAGCTAATGGGAGTGTGATAGAGACACTTGTAATTCTTTCGACTGATGTTGTCCAAGTTGTTGCTAAGGGAGTTCTGTTTCCA
GCTGATGGCGTCACTGGAAATATATCTGGTGGCAATGTAGAAGCTGCTCTAACCAATGCTCCGTCTTCTGAGATTGTAGCGAGCGAGGCAAAGAAATCTA
ACAAGTTCACTGTGGATAAAAAGAAATCTAATCACAACAGGAGTTCAGTCAAAAACAAGAACGGTACTTCCCATGGTCTTATGCCGACAAAAGCAGGAAA
GGATCCTGAAGGGAGAAAAACGCCACCAAATCAAATAGGAAAAACAATGGAATTTGAACATGGGGAAAGAGATGGTGTGCATATCCCAAAGAGAGAAGCT
TCTTTTGGTGACTCAGTTAATGGACGACAGACTAGAGATGACAGGTCACAGGAGGAGCAGGGTCATTATAAACAGAAGTTTGATTTTCAAACAGAAAAGA
GTGCTGATGAAGTTCATAGCCCAAATGCAATCACAGGGCCTCATGACAGTGAAGCAAAATCCATTGCAGAAGGGCGAGTAACAGTGAAGCTGTTGCCTAA
TGTTGTATCTTGTAATCCCGATGGTGATCTTATGAAGCCAGACAGTCAATACTGTGGAAGGCCTGCTTCTGCAGGAACCACCTCTCCTAGTTCTGTTTGT
GCTAGTGTTTCTACTGCTTCCAATCCAATGGTTGATGTTCCTTCAGAATCACACTGTAGCTCATCAGCAAATTCAACTGATGTGGCCTCTCCACAAGTTT
CAGAATCTAATAGAAGTTCCAAGGCATTCAAGCTCAATCCAGGAGCAAAAATTTTTTCTCCTTCCTTTTCCAATCCTACATCAGCTAATGCTCCAGCAGT
GCCAACAGTTCCAAGTATGGCTTACATACCAAGCAACTCTCCTGTGGTACCTGTTGCTGTTGTCCAGCCAGAAGTTGGGATCCCTTGTGCACCTCGATCA
TCTGTTCCTGCTAAGTTTCCCCCCTACAGTAACTTGACAGCTGTAAATGGTGGCAGTGGTTCTCAATTTTCACCTGTTGCTGGACACGTGGGAACCAGAG
TACAGTCACTTAGATATGCTGGTCAGTATCATGCTGTTCAGGCAGCACCATCATATGCACAACCAAATTCTCAATCCGTTATGGTTGGACGGATGGGGCA
GCTTGTGTATGTTCAGCCAGTTTATCATGATTCGGTTCCAATTGCAGCACCCATATCAACTGTATCTGCACGTCCTCTGTTAACTCCACACCAGGTCCAG
TATCCTAAACACCAAGGAGGTGCAGCAGGCCAAACCTTGCAGCTTTGTGTGACTCCACCTTTTGTAGGTGGACAGCAACCATTTGTAGAGCCAAGCCAGA
TTCCTTTTCTTCAGCCACCCATCCCTGCTATCCGTCCCATTCCAGTTCCAGGATCTAATACTCTCTTTGGCACCAAGTTTCCATGA
AA sequence
>Potri.011G138600.1 pacid=42781505 polypeptide=Potri.011G138600.1.p locus=Potri.011G138600 ID=Potri.011G138600.1.v4.1 annot-version=v4.1
MGYKNRAEAETEACLNEALLFATMCIIGLPVDVHIRDGSVYSGTFHTASFDKENGVVLKEARLTRKGKSDANVANGSVIETLVILSTDVVQVVAKGVLFP
ADGVTGNISGGNVEAALTNAPSSEIVASEAKKSNKFTVDKKKSNHNRSSVKNKNGTSHGLMPTKAGKDPEGRKTPPNQIGKTMEFEHGERDGVHIPKREA
SFGDSVNGRQTRDDRSQEEQGHYKQKFDFQTEKSADEVHSPNAITGPHDSEAKSIAEGRVTVKLLPNVVSCNPDGDLMKPDSQYCGRPASAGTTSPSSVC
ASVSTASNPMVDVPSESHCSSSANSTDVASPQVSESNRSSKAFKLNPGAKIFSPSFSNPTSANAPAVPTVPSMAYIPSNSPVVPVAVVQPEVGIPCAPRS
SVPAKFPPYSNLTAVNGGSGSQFSPVAGHVGTRVQSLRYAGQYHAVQAAPSYAQPNSQSVMVGRMGQLVYVQPVYHDSVPIAAPISTVSARPLLTPHQVQ
YPKHQGGAAGQTLQLCVTPPFVGGQQPFVEPSQIPFLQPPIPAIRPIPVPGSNTLFGTKFP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G54920 unknown protein Potri.011G138600
[exp]
0 1
AT5G28850 Calcium-binding EF-hand family... Potri.013G047300
[exp]
1.00 0.7229
AT1G10430 PP2A-2 protein phosphatase 2A-2 (.1) Potri.015G068300
[exp]
7.34 0.6672 VFPP2.2
AT1G24267 Protein of unknown function (D... Potri.003G169200
[exp]
7.41 0.6816
AT1G27600 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGU... Potri.002G107300
[exp]
8.48 0.6591
AT5G11500 unknown protein Potri.006G241900
[exp]
8.83 0.6575
AT1G54215 proline-rich family protein (.... Potri.001G169200
[exp]
9.38 0.6608
AT5G13890 Family of unknown function (DU... Potri.002G237200
[exp]
10.39 0.6884
AT1G04990 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.014G159500
[exp]
11.48 0.6814 Pt-ZFN2.1
AT2G40290 Eukaryotic translation initiat... Potri.010G184900
[exp]
19.10 0.7052
AT3G11450 DnaJ domain ;Myb-like DNA-bind... Potri.003G190000
[exp]
19.74 0.6747

Potri.011G138600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.