Plant FIBer expression Database

Potri.011G138700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G54930 92 / 7e-21 AT hook motif-containing protein (.1.2)
AT5G52890 81 / 1e-16 AT hook motif-containing protein (.1.2)
AT4G21895 79 / 2e-16 DNA binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G422966
[exp]
453 / 8e-159 AT5G54930 102 / 4e-25 AT hook motif-containing protein (.1.2)
Potri.004G017000
[exp]
86 / 6e-18 AT4G21895 96 / 2e-22 DNA binding (.1)
Potri.011G001901
[exp]
69 / 2e-12 AT4G21895 74 / 5e-15 DNA binding (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10016478
[exp]
146 / 3e-40 AT5G54930 125 / 5e-34 AT hook motif-containing protein (.1.2)
Lus10040754
[exp]
136 / 9e-37 AT5G54930 132 / 1e-36 AT hook motif-containing protein (.1.2)
Lus10002064
[exp]
83 / 7e-17 AT5G52890 114 / 4e-28 AT hook motif-containing protein (.1.2)
Lus10001140
[exp]
83 / 8e-17 AT5G52890 113 / 2e-27 AT hook motif-containing protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.011G138700.7 pacid=42781114 polypeptide=Potri.011G138700.7.p locus=Potri.011G138700 ID=Potri.011G138700.7.v4.1 annot-version=v4.1
ATGACTGATAGTGTACTCTTTTTTGTAGAAGTTGGTTATGTTTGTTTGCAAATGCACGTGTTGATCTCTTTACTGGCATCTGTTCCATCATGGTTGGCCC
AATTTGCTTCACAAACTAAATATTTGCTCTTTGCTGCAGGGAGGAAAACAATAAAAGATCATTCAGGGAAGGAAATTATACAGAACATGAGTGAAGTAAA
CCAAGGGAATAATCCTGATGCTTCAGCAATCATCCCTCTGAAACGCAAGCGTGGTCGTCCACGCAAGTACCCTAAACTGGAGGTTGATCATAATGGGAAT
GCCTATGTTCCAAGGGATCAAAATCCAAACCATGGGGAGAATGCTCGTACTACTCCTGGATTTGGAGGGGTCAATGGTAATCGGCCACATCAAGTAGATC
CAGTTAATGATGCAATTGATTCCATGATAGGCCAGTCAGTGCATGGTATTATAGAGGCGACATTTGATGCTGGATATTTGCTTAATGTCAGGGTTGGTGA
TACCGAAACAACTTTGAGGGGTGTTGTTTTTAAGCCTGGACATTACGTCCCTGTTATGCCAGAAAATGATATCGCCCCAGGTGTCCCAATGATCAGAAGG
AATGAGATTCCCCTTCCGAGAGAAAGCAATACTAAGGTCCACAGCCGTAATCCTGGGCCTAGAGACATAAATGGAACTGCTCATGCTGCCCGAGCTGCTA
ATCCAGCTGGATCAAAAGGTAAGCAGGTGCTTTCAGTGGTACCCCAAACCCCTGCAATATCAAGAGGCAATTTAGTTCCTGTTGTACTTCAGCCAGTCAA
TCTATCAAATGGTGCACCTAGTGCCAGTGCCACAAGCCAAACTCCCCATCCGGTGACTTCTAAAGGCAAGCAGATTCGAGATGCTGCTCATTCATCAAAT
GGATCAACACCAACAAATGAAGTCATGCAATTTCAATCTCAAAATAACCACCAGGTGATGCATTCAGGATTGCAAAATCCAAGTCCTTTTAATCAAACTC
AAGCTGGGGGACTACATGAATCAGAAGCCAACCCAACGAAAACAACTGGTGTGCCTTTTGAGAAACTGTTAACTGATGTAATCAAGAGGGTTCCTGCTCC
ATTACAGTCAACAGATACTAATAGCAGCTCAGCTGTTAACTTGCCTGTGAAAGATTCTGGTATTGTGGCAGAAAAGGATGTCAGTGACACAGATCAGGCC
CTGTCTGTTGAACCACTGCAAGTTTTACAGCCTAATGTTGGCTGTCATCCTGCGGTTGCATCTAGACCTTCCGAGGAATACAAGACTGGCAAAATGACTC
AGCTCTTGCAGAAGGTTTTGCAGGAAAGCATGGCAGACAATCCAGGGGCCTGTACTGAGGGGCCGGCTGCAGGTTTAGATTGA
AA sequence
>Potri.011G138700.7 pacid=42781114 polypeptide=Potri.011G138700.7.p locus=Potri.011G138700 ID=Potri.011G138700.7.v4.1 annot-version=v4.1
MTDSVLFFVEVGYVCLQMHVLISLLASVPSWLAQFASQTKYLLFAAGRKTIKDHSGKEIIQNMSEVNQGNNPDASAIIPLKRKRGRPRKYPKLEVDHNGN
AYVPRDQNPNHGENARTTPGFGGVNGNRPHQVDPVNDAIDSMIGQSVHGIIEATFDAGYLLNVRVGDTETTLRGVVFKPGHYVPVMPENDIAPGVPMIRR
NEIPLPRESNTKVHSRNPGPRDINGTAHAARAANPAGSKGKQVLSVVPQTPAISRGNLVPVVLQPVNLSNGAPSASATSQTPHPVTSKGKQIRDAAHSSN
GSTPTNEVMQFQSQNNHQVMHSGLQNPSPFNQTQAGGLHESEANPTKTTGVPFEKLLTDVIKRVPAPLQSTDTNSSSAVNLPVKDSGIVAEKDVSDTDQA
LSVEPLQVLQPNVGCHPAVASRPSEEYKTGKMTQLLQKVLQESMADNPGACTEGPAAGLD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G54930 AT hook motif-containing prote... Potri.011G138700
[exp]
0 1
AT5G13520 peptidase M1 family protein (.... Potri.010G215700
[exp]
1.00 0.9103
AT5G66360 DIM1B adenosine dimethyl transferase... Potri.018G018900
[exp]
1.73 0.8979
AT5G62810 ATPEX14, PED2, ... PEROXISOME DEFECTIVE 2, peroxi... Potri.015G076100
[exp]
2.00 0.8958
AT3G22530 unknown protein Potri.010G086400
[exp]
3.16 0.8935
AT1G26180 unknown protein Potri.008G109700
[exp]
5.47 0.9045
AT5G07670 RNI-like superfamily protein (... Potri.002G143200
[exp]
5.47 0.8828
AT2G14910 unknown protein Potri.001G298200
[exp]
10.19 0.8768
AT5G23710 DNA binding;DNA-directed RNA p... Potri.018G000800
[exp]
11.83 0.8758
AT1G15340 MBD10 methyl-CPG-binding domain 10 (... Potri.006G067700
[exp]
14.45 0.8798
AT1G77360 Tetratricopeptide repeat (TPR)... Potri.017G126600
[exp]
15.55 0.8612

Potri.011G138700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.