Plant FIBer expression Database

Potri.011G138900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G30580 73 / 1e-14 LPAT1, ATS2, EMB1995 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G183700
[exp]
72 / 3e-14 AT4G30580 388 / 2e-134 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Potri.014G042200
[exp]
44 / 0.0001 AT1G80950 506 / 7e-180 Phospholipid/glycerol acyltransferase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036259
[exp]
72 / 5e-14 AT4G30580 340 / 6e-116 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Lus10022158
[exp]
72 / 8e-14 AT4G30580 331 / 5e-111 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Lus10003950
[exp]
43 / 0.0002 AT1G80950 492 / 4e-174 Phospholipid/glycerol acyltransferase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0228 Acyltransferase PF01553 Acyltransferase Acyltransferase
Representative CDS sequence
>Potri.011G138900.2 pacid=42780986 polypeptide=Potri.011G138900.2.p locus=Potri.011G138900 ID=Potri.011G138900.2.v4.1 annot-version=v4.1
ATGGACAATACTGGAGGTGGTTCTTTCATGAGGAATAGGAGATTGGAGAGCTTCCTGGATACAAATTCCACTCCAAATGGGAAACAAACCCCAAAGATTT
TGGTGAGGGAAGAAGTGGTAAAAAGTCCCAAGAGTGATGTTTATGTTGAAGATGATGGGTGGATTTCTGCATTGATATCTTGTGTAAGGATTGTGGTTTG
TTTTTTGTCAATGATGGTCACAACATTCATTTGGTCCTTGATATTGCTCTTGCTCTTACCATGGCCTTATGAGAGGATCAGGCAGGGAAATATTTATGGG
CATGTTACTGGTAGAATGCTGATGTGGATCTTAGGGAATCCTATCAGGATTGAAGGCCCTGAATTTTCAAATGAGAGGGCCATTTATGTCTGCAATCATG
CTTCTCCTATAGACATTTTCCTTATGATGTGGTTGACTCCCACGGGCACTGTTGGCATTGCAAAGAAAGAGATCATATGGTACCCTTTATTTGGACAACT
TTATGTATTGGCAAACCATCTTCGAATAGATCGCTCCAATCCTACTGCAGCTATTCAATCCATGAAGGAGGTAGCTCATGCAGTAGTGAAAAACAACCTG
TCACTCATCATTTTTCCTGAGGGGACTAGATCAAAAAATGGACGATTACTACCCTTTAAAAAGGGTTTTGTTCATTTAGCATTGCAAACGCGCCTCCCAA
TAGTTCCAATGGTCTTTACAGGCACCCATCATGCATGGAGGAAAGGCGGCTTACATGTTCGGCCAGCGCCTATAACAGTCAAGTATCTCCGGCCAATAAA
AACTGATGATTGGACAGATGACAAGGTTAATGACTACGTCAGACTGCTCCATGACATATATGTTGAAAACCTTCCAGAGGCGCAAAGGCCTCTTCATTAG
AA sequence
>Potri.011G138900.2 pacid=42780986 polypeptide=Potri.011G138900.2.p locus=Potri.011G138900 ID=Potri.011G138900.2.v4.1 annot-version=v4.1
MDNTGGGSFMRNRRLESFLDTNSTPNGKQTPKILVREEVVKSPKSDVYVEDDGWISALISCVRIVVCFLSMMVTTFIWSLILLLLLPWPYERIRQGNIYG
HVTGRMLMWILGNPIRIEGPEFSNERAIYVCNHASPIDIFLMMWLTPTGTVGIAKKEIIWYPLFGQLYVLANHLRIDRSNPTAAIQSMKEVAHAVVKNNL
SLIIFPEGTRSKNGRLLPFKKGFVHLALQTRLPIVPMVFTGTHHAWRKGGLHVRPAPITVKYLRPIKTDDWTDDKVNDYVRLLHDIYVENLPEAQRPLH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G30580 LPAT1, ATS2, EM... lysophosphatidic acid acyltran... Potri.011G138900
[exp]
0 1
AT5G61670 unknown protein Potri.012G114200
[exp]
2.44 0.9258
AT2G24270 ALDH11A3 aldehyde dehydrogenase 11A3 (.... Potri.018G109700
[exp]
9.43 0.9321 Pt-ALDH11.1
AT3G01500 SABP3, ATBCA1, ... ARABIDOPSIS THALIANA SALICYLIC... Potri.001G348900
[exp]
10.29 0.9272 CA1.3
AT2G26580 YABBY YAB5 YABBY5, plant-specific transcr... Potri.018G129800
[exp]
17.23 0.9265
AT3G29780 RALFL27 ralf-like 27 (.1) Potri.017G095700
[exp]
18.38 0.9204
AT3G29780 RALFL27 ralf-like 27 (.1) Potri.017G096300
[exp]
19.44 0.9204
AT3G29780 RALFL27 ralf-like 27 (.1) Potri.017G098100
[exp]
19.67 0.9219
AT2G45190 YABBY FIL, YAB1, AFO YABBY1, FILAMENTOUS FLOWER, AB... Potri.002G145100
[exp]
20.68 0.9262
AT4G14890 FdC2 ferredoxin C 2, 2Fe-2S ferredo... Potri.010G087300
[exp]
22.24 0.9260
AT3G26060 ATPRXQ ,ATPRX Q peroxiredoxin Q, Thioredoxin s... Potri.006G137500
[exp]
24.24 0.9251 Pt-PRXQ.1

Potri.011G138900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.