Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32645 67 / 8e-13 Domain of unknown function (DUF313) (.1) AT2G27410 62 / 5e-11 B3 Domain of unknown function (DUF313) (.1) AT3G24850 55 / 3e-08 B3 Domain of unknown function (DUF313) (.1) AT2G31720 52 / 2e-07 B3 Domain of unknown function (DUF313) (.1) AT2G24670 50 / 8e-07 B3 Domain of unknown function (DUF313) (.1) AT2G31420 49 / 8e-07 B3 Domain of unknown function (DUF313) (.1) AT1G05920 46 / 2e-05 B3 Domain of unknown function (DUF313) (.1) AT5G38490 45 / 4e-05 B3 Domain of unknown function (DUF313) (.1) AT2G31460 43 / 0.0001 B3 Domain of unknown function (DUF313) (.1) AT2G18810 42 / 0.0003 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031600 [exp] 249 / 2e-79 AT2G27410 59 / 2e-09 Domain of unknown function (DUF313) (.1) Potri.019G076500 [exp] 142 / 6e-39 AT2G27410 61 / 2e-10 Domain of unknown function (DUF313) (.1) Potri.013G065401 [exp] 123 / 8e-34 AT2G24670 51 / 5e-08 Domain of unknown function (DUF313) (.1) Potri.015G014700 [exp] 60 / 9e-10 AT3G24850 75 / 8e-15 Domain of unknown function (DUF313) (.1) Potri.015G014200 [exp] 57 / 6e-09 AT3G24850 73 / 2e-14 Domain of unknown function (DUF313) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000815 [exp] 76 / 5e-15 AT2G27410 68 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10038802 [exp] 62 / 1e-10 AT3G24850 69 / 1e-13 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 61 / 2e-10 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1) Lus10027284 [exp] 56 / 1e-08 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10027286 [exp] 49 / 4e-06 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10030994 [exp] 47 / 1e-05 AT2G27410 60 / 4e-10 Domain of unknown function (DUF313) (.1) Lus10030996 [exp] 45 / 8e-05 AT2G27410 63 / 3e-11 Domain of unknown function (DUF313) (.1) Lus10035393 [exp] 41 / 0.0005 AT2G27410 68 / 4e-14 Domain of unknown function (DUF313) (.1) Lus10035394 [exp] 40 / 0.0006 AT2G27410 61 / 1e-11 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [poplar] [flax] DNA_b-psBarrel PF03754 [poplar] [flax] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Potri.011G139000.1 pacid=42782168 polypeptide=Potri.011G139000.1.p locus=Potri.011G139000 ID=Potri.011G139000.1.v4.1 annot-version=v4.1 ATGTTGCTCACGCGTGGCATTAACCATCATCCATATTTTGATGATGTTGATGAATATTATCTAGGGCTTAGTAAGGAAACAGAATATGAAAAAGAAGCGT CAAATCCTCTGGAGAAGGAATTCGGGGGTCCATCCAAGCTGGTTACCGGTGCCGAAAGATATCAGCTTTTGAAGACCCTGACCAGTAGGGTTTTCGTACC CAAGAAAATAAGAGGAAGTGGAAGACTAGGGTTTACATCCATGAAAACCCAATGTCCTGATCAAAAAGCCGAGAGCACTACTATCAGCATTGATGAATTT GTAAACCCACTCGGAACTATTCTTGTACCAAAGAAAAGAAGGGCAAGTAGACCCAAGCTTGTCAGGAAAAACAATCACTGCATCAGATTCGATCAAGAAG ATCAATATCTTCTTTTGAGAACGGAGATCAAAAGTAGCCAGGAGAAAAAGACAGCAGGCAGAAAACGAGTCTTGAAAAGCCAAGGGATCGATGTCGTAGA TGATCTTCGAAAGAGATCATCAAAGAAGATGAAGAAGATGGGAAAGAGGGTGGATTTCAAGAAGCTGGGTTTGTATCCACCACCCGATTTCTCTTCTCAA ATAAAATCCGCGATAAGTTATCAAGAAGGCCGTGACAGTGAAATCAAGTTAAGGATAATGAAACAAATCTTCAAGACTGACATGGACAAGCACCAGGAAC GCTTCTCAATGCCTTTGAATCAGATTAAGGACGGCCATGAGTTTCTGAATAAAATGGAGATGGAGGAGGTGTGCCAAAGCGAGAGTAAGAGCACAGAAGT GAAGCTAGTGGAACTGGGTCTTGAAGGTGGTAACGTTCATCAAAGCACAATGAGGCTGAGGAGGTGGCAGATGAATAACACCGTTTCCTATGTGTTAACC TCCAATTGGAATGATGTTTTGGATAGGAATGCGGGAGCGCTAAAGGTGGATGATATTGTCCAAGTCTATTCTTTCAGGCGTGATCAGAAGCTATGCCTTG TGCTCGTCAAGGTTATGGATGCAGATGATCAAAGCCGGCAATGGCCGAGGGAACAGTGA
AA sequence Show only first row Show all	>Potri.011G139000.1 pacid=42782168 polypeptide=Potri.011G139000.1.p locus=Potri.011G139000 ID=Potri.011G139000.1.v4.1 annot-version=v4.1 MLLTRGINHHPYFDDVDEYYLGLSKETEYEKEASNPLEKEFGGPSKLVTGAERYQLLKTLTSRVFVPKKIRGSGRLGFTSMKTQCPDQKAESTTISIDEF VNPLGTILVPKKRRASRPKLVRKNNHCIRFDQEDQYLLLRTEIKSSQEKKTAGRKRVLKSQGIDVVDDLRKRSSKKMKKMGKRVDFKKLGLYPPPDFSSQ IKSAISYQEGRDSEIKLRIMKQIFKTDMDKHQERFSMPLNQIKDGHEFLNKMEMEEVCQSESKSTEVKLVELGLEGGNVHQSTMRLRRWQMNNTVSYVLT SNWNDVLDRNAGALKVDDIVQVYSFRRDQKLCLVLVKVMDADDQSRQWPREQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G32645			Domain of unknown function (DU...		Potri.011G139000 [exp]	0	1
					Potri.002G169550 [exp]	3.74	0.7641
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Potri.006G064100 [exp]	3.87	0.6988
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Potri.008G008400 [exp]	6.00	0.7123
AT5G01075			Glycosyl hydrolase family 35 p...		Potri.014G017600 [exp]	9.05	0.7226
AT4G35530			phosphatidylinositolglycan-rel...		Potri.006G255301 [exp]	19.62	0.6944
AT1G26160			Metal-dependent phosphohydrola...		Potri.010G133001 [exp]	19.74	0.6613
AT3G27120			P-loop containing nucleoside t...		Potri.001G331300 [exp]	21.00	0.6779
					Potri.014G092050 [exp]	24.39	0.6589
AT3G55330		PPL1	PsbP-like protein 1 (.1)		Potri.008G050300 [exp]	31.01	0.6293
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.005G122550 [exp]	31.46	0.6568

Compare expression of checked genes

Potri.011G139000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.