Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50670 361 / 2e-128 OTU-like cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G435500 [exp] 407 / 2e-146 AT1G50670 374 / 4e-134 OTU-like cysteine protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021522 [exp] 384 / 5e-137 AT1G50670 372 / 3e-133 OTU-like cysteine protease family protein (.1) Lus10040075 [exp] 382 / 2e-136 AT1G50670 368 / 1e-131 OTU-like cysteine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02338 [poplar] [flax] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Potri.011G139500.1 pacid=42780469 polypeptide=Potri.011G139500.1.p locus=Potri.011G139500 ID=Potri.011G139500.1.v4.1 annot-version=v4.1 ATGTCCTTTTCTTGTTGTGTTTCTGCATCTGGGTTGGTTTTGCTTGGTGGAAATTTGGGTCCTTTTCAAGTTTTTGGAAGGTTCTTGATTATTGATATAA TGGAAGGAATCGTCGTTAGAAGGGTCATTCCCTCGGACAATAGTTGCCTGTTCAATGCTGTTGGCTATGTTATGGACCATGACAAAAATAAAGCTTATGG GTTGAGACAGGTTATAGCTGGAACAGTGGCAAGCGATCCAGAAAAATATAATGAAGCATTTCTCGGGAAGCCAAATGGTGAATATTGTAATTGGATTCGT GACTCTGAGAAGTGGGGAGGTGCTATTGAGCTTTCAATATTAGCAGATTATTATGGACGTGAAATTGCGGCATATGATATCCAGACCATGCGGTGTGATT TGTATGGTCAGGACAGGAAGTACTCAGAAAGGGCCATGCTGATTTACGATGGACTCCATTATGATGCTTTAGCTATGTCTCCATTTGAGGGAGCTCCAGA GGAGTTTGATCAGACCATATTTACTGTACAGAAGGACAGGACCATAGGACCAGCTGAGGGGCATGCTCTTAATCTTGTTAAGGAGCAACAAAGGAAAAGA AGTTACACAGACACTGCCAACTTCACTTTGCGCTGCGGGGTATGCCAAATTGGAGTCATTGGCCAGAAGGAGGCCGTCGAGCATGCACAAACCACAGGCC ATGTGAACTTTCAAGAATACAGATGA
AA sequence Show only first row Show all	>Potri.011G139500.1 pacid=42780469 polypeptide=Potri.011G139500.1.p locus=Potri.011G139500 ID=Potri.011G139500.1.v4.1 annot-version=v4.1 MSFSCCVSASGLVLLGGNLGPFQVFGRFLIIDIMEGIVVRRVIPSDNSCLFNAVGYVMDHDKNKAYGLRQVIAGTVASDPEKYNEAFLGKPNGEYCNWIR DSEKWGGAIELSILADYYGREIAAYDIQTMRCDLYGQDRKYSERAMLIYDGLHYDALAMSPFEGAPEEFDQTIFTVQKDRTIGPAEGHALNLVKEQQRKR SYTDTANFTLRCGVCQIGVIGQKEAVEHAQTTGHVNFQEYR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50670			OTU-like cysteine protease fam...		Potri.011G139500 [exp]	0	1
AT1G30300			Metallo-hydrolase/oxidoreducta...		Potri.011G081600 [exp]	1.00	0.9501
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	6.32	0.9347
AT2G38710			AMMECR1 family (.1.2)		Potri.008G019325 [exp]	6.92	0.9053
AT3G01750			Ankyrin repeat family protein ...		Potri.010G055700 [exp]	7.34	0.9244
AT5G59410			Rab5-interacting family protei...		Potri.001G241500 [exp]	8.30	0.9329
AT5G47540			Mo25 family protein (.1)		Potri.002G222800 [exp]	8.94	0.9177
AT1G43890		ATRAB-C1, RAB18...	RAB GTPASE HOMOLOG 18-1, ARABI...		Potri.005G063500 [exp]	9.32	0.8980	RAB1.8
AT2G42500		PP2A-3, PP2A-4	protein phosphatase 2A-3 (.1.2...		Potri.001G007800 [exp]	9.89	0.9188	PP2.4
AT3G53020		RPL24B, STV1	SHORT VALVE1, Ribosomal protei...		Potri.015G141900 [exp]	12.64	0.9309
AT4G28980		CAK1AT, CDKF;1	CYCLIN-DEPENDENT KINASE F;1, C...		Potri.018G083300 [exp]	14.49	0.8947	Pt-CAK1.2

Compare expression of checked genes

Potri.011G139500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.