Plant FIBer expression Database

Potri.011G139600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G20390 245 / 3e-83 endoribonuclease L-PSP family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G435700
[exp]
373 / 9e-134 AT3G20390 250 / 2e-85 endoribonuclease L-PSP family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040074
[exp]
273 / 3e-94 AT3G20390 243 / 1e-82 endoribonuclease L-PSP family protein (.1)
Lus10021523
[exp]
266 / 2e-91 AT3G20390 242 / 3e-82 endoribonuclease L-PSP family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0534 YjgF-like PF01042 Ribonuc_L-PSP Endoribonuclease L-PSP
Representative CDS sequence
>Potri.011G139600.1 pacid=42781917 polypeptide=Potri.011G139600.1.p locus=Potri.011G139600 ID=Potri.011G139600.1.v4.1 annot-version=v4.1
ATGTCGTGGTGTGTTCTAAAACCCTTTAATGTCTCGTTGATCAACGTCGGTGCAGTGCGCAACCGAATCCCATTTGCTATCGGCGGCATTGGTTGCGCCT
CCGTCGTCGCAACCGGTTTTTGGCGGCAGTGTTGTACCAATCGATTAACCACCCCTCCTTTCGCTTCCTTGAACACTTGCACTTTCCCTCCTCAAAAGGA
GGCTGTTAAAACAGACAAGGCTCCGGCAGCATTGGGACCATATTCTCAAGCAATTAAATCCAATAACCTTGTATTTGTTTCTGGTGTCTTAGGTCTCATT
CCAGAGACTGGGAAGTTTGTCTCACAGGATGTTGAGGATCAGACAGAACAGGTACTTAAGAATATGGGGGAGATACTGAAAGCTAGTGGTAGCGACTATT
CCTTAGTAGTAAAGACAACGATAATGTTAGCTGACTTGAAAGACTTCAAGAAAGTGAATGATATCTATGCAAACTACTTCCCTGCACCATTTCCTGCTCG
CTCAACTTATCAGGTAGCAGCGTTGCCTCTGGATGCCAAAATTGAAATCGAGTGCATTGCTGAACTTCCCCAAAAAGTGGAGCCTCAGCCAGTCTCGCAC
ACATGA
AA sequence
>Potri.011G139600.1 pacid=42781917 polypeptide=Potri.011G139600.1.p locus=Potri.011G139600 ID=Potri.011G139600.1.v4.1 annot-version=v4.1
MSWCVLKPFNVSLINVGAVRNRIPFAIGGIGCASVVATGFWRQCCTNRLTTPPFASLNTCTFPPQKEAVKTDKAPAALGPYSQAIKSNNLVFVSGVLGLI
PETGKFVSQDVEDQTEQVLKNMGEILKASGSDYSLVVKTTIMLADLKDFKKVNDIYANYFPAPFPARSTYQVAALPLDAKIEIECIAELPQKVEPQPVSH
T

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G20390 endoribonuclease L-PSP family ... Potri.011G139600
[exp]
0 1
AT5G13120 Pnsl5, ATCYP20-... Photosynthetic NDH subcomplex... Potri.003G167700
[exp]
2.44 0.8472
AT3G17210 ATHS1 A. THALIANA HEAT STABLE PROTEI... Potri.010G150700
[exp]
10.58 0.8428
AT3G48550 unknown protein Potri.012G097901
[exp]
12.00 0.8123
AT3G63170 Chalcone-flavanone isomerase f... Potri.002G052200
[exp]
19.23 0.8133
AT5G43940 PAR2, ATGSNOR1,... PARAQUAT RESISTANT 2, sensitiv... Potri.002G254900
[exp]
19.67 0.8048 FDH1
AT3G63410 VTE3, APG1, IEP... VITAMIN E DEFECTIVE 3, INNER E... Potri.005G215900
[exp]
27.49 0.7988
AT5G47630 MTACP3 mitochondrial acyl carrier pro... Potri.006G005700
[exp]
27.65 0.7685
AT1G27370 SBP SPL10 squamosa promoter binding prot... Potri.014G057800
[exp]
27.74 0.8009
AT5G10610 CYP81K1 "cytochrome P450, family 81, s... Potri.017G023850
[exp]
41.47 0.8057
AT3G14225 GLIP4, EMB1474 GDSL-motif lipase 4 (.1) Potri.007G133766
[exp]
47.62 0.8006

Potri.011G139600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.