Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17230 1363 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 1001 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 997 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT3G24240 647 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 632 / 0 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 619 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 619 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 610 / 0 Protein kinase family protein with leucine-rich repeat domain (.1) AT3G49670 599 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 595 / 0 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G025500 [exp] 1020 / 0 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G174900 [exp] 1017 / 0 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 1014 / 0 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G053400 [exp] 1009 / 0 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G175700 [exp] 628 / 0 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 617 / 0 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G156200 [exp] 614 / 0 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 612 / 0 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G164800 [exp] 612 / 0 AT5G56040 1435 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023681 [exp] 792 / 0 AT2G33170 1152 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10011761 [exp] 744 / 0 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10000509 [exp] 619 / 0 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10017782 [exp] 609 / 0 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 609 / 0 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10023677 [exp] 603 / 0 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028612 [exp] 602 / 0 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10018911 [exp] 596 / 0 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10036251 [exp] 582 / 0 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10039030 [exp] 581 / 0 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G139700.1 pacid=42782067 polypeptide=Potri.011G139700.1.p locus=Potri.011G139700 ID=Potri.011G139700.1.v4.1 annot-version=v4.1 ATGATGCCAAGCCAGTTGAATTCTCCCATTCCTTACAACCTCTTTTGCTTGGTCTTTTTGATGCTTTATTTCCATTTTGTATTCGTAATATCATTAAATC AAGAGGGTGCTTTTCTTTTGGAGTTTACGAAGTCAGTCATTGATCCTGATAACAATCTTCAAGGCTGGAATTCTTTGGACTTGACTCCTTGCAACTGGAA GGGAGTAGGTTGTTCTACCAATCTTAAGGTAACGTCTTTGAATCTCCATGGCCTTAATTTGTCTGGTAGTCTGTCTACAACTGCAAGTATATGTCATAAT CTCCCTGGTTTAGTCATGTTGAATATGTCCTCCAACTTCTTTTCTGGTCCCATTCCTCAGTATCTTGATGAGTGTCATAATCTAGAGATTCTTGACCTTT GTACCAATAGGTTTCGTGGGGAATTTCCAACACATCTGTGCACACTTAACACTCTTAGACTGCTTTATTTCTGTGAGAATTATATATTCGGAGAAATCTC TAGGGAGATAGGAAATTTGACTTTACTTGAAGAGCTTGTCATCTATAGCAATAATCTCACAGGCACAATTCCTGTATCAATCCGTGAGTTAAAGCATCTT AAGGTCATCAGGGCAGGTTTAAACTATTTCACAGGTCCAATACCGCCCGAAATTAGCGAATGTGAGAGCTTAGAGATACTCGGGTTGGCACAGAATCGTT TCCAAGGTTCTCTTCCAAGGGAGCTTCAGAAACTTCAGAATCTTACCAATTTGATCCTTTGGCAAAACTTTTTGTCTGGGGAGATTCCTCCTGAGATAGG AAATATCAGCAACCTAGAGGTGATTGCATTGCATGAAAATTCCTTTAGTGGGTTTCTTCCAAAAGAACTTGGCAAATTATCCCAGCTAAAAAAACTGTAC ATATATACCAACCTGTTGAATGGAACAATTCCTCGGGAACTAGGAAATTGCAGTAGTGCTCTTGAGATAGATCTTTCTGAGAATAGGTTAAGTGGGACTG TTCCAAGAGAGTTGGGGTGGATTCCTAATCTCCGCTTGCTTCATCTTTTTGAGAATTTCCTTCAGGGAAGTATTCCCAAGGAGCTTGGAGAGTTAACACA GCTGCATAACTTTGACCTGTCCATAAATATCCTGACAGGTTCAATTCCTCTAGAATTTCAAAACCTAACATGTCTAGAGGAGTTGCAGCTTTTTGACAAC CATCTTGAGGGTCATATTCCTTATCTCATTGGGTATAATAGTAACCTCTCTGTCCTTGACTTATCTGCCAACAATCTAGTTGGTAGCATACCTCCATACC TTTGCAGGTACCAGGATTTAATATTTTTGAGCCTTGGATCAAATAGGTTGTTTGGAAACATTCCTTTTGGTCTGAAAACATGCAAGTCTCTTAAGCAGCT AATGCTTGGGGGTAACTTGCTCACGGGAAGTCTCCCTGTTGAATTATATCAACTTCAGAATCTTTCTTCTCTTGAGATTCATCAAAACCGATTCTCCGGG TATATACCCCCTGGTATAGGCAAGCTCGGGAATTTGAAGAGGTTGCTCTTGTCAGATAACTATTTTTTTGGGCAAATTCCTCCAGAGATAGGAAACCTGA CGCAGCTCGTTGCATTCAACATTTCTTCCAATGGGCTCTCTGGAGGTATTCCTCATGAATTGGGAAATTGCATAAAACTTCAGAGGCTTGATCTCAGTCG GAACCAATTCACAGGCTCTCTCCCGGAAGAAATTGGCTGGCTGGTGAACCTGGAACTCCTGAAGCTTTCAGACAACAGAATTACTGGAGAAATCCCAAGC ACCTTAGGCAGTCTAGACAGACTTACCGAGTTGCAAATGGGAGGGAATCTTTTTTCTGGTGCCATACCTGTTGAGCTTGGTCAACTTACCACTCTCCAGA TTGCTCTCAACATTAGCCACAATCGCCTTTCTGGTACAATTCCCAAAGACTTGGGGAAACTGCAGATGCTAGAATCACTCTACTTGAACGACAATCAACT CGTCGGTGAGATTCCTGCGTCTATTGGTGAGCTGCTGAGCCTTCTAGTCTGCAATCTTTCTAACAATAACCTGGAAGGAGCAGTGCCAAATACTCCCGCA TTTCAAAAAATGGACTCAACAAATTTTGCTGGCAACAATGGCTTGTGCAAATCAGGTTCTTACCATTGTCATTCTACGATCCCATCTCCTACTCCTAAAA AAAACTGGATCAAGGAGAGCTCATCCAGAGCTAAATTAGTGACCATTATTTCTGGAGCTATCGGGTTAGTTTCTCTGTTTTTCATAGTGGGAATCTGTAG GGCTATGATGCGTCGCCAACCTGCTTTTGTTTCACTTGAAGACGCAACAAGGCCTGATGTCGAAGACAACTATTATTTTCCTAAAGAAGGGTTCTCGTAT AATGACCTTTTGGTGGCCACTGGAAATTTTTCGGAAGATGCAGTTATAGGAAGGGGAGCCTGTGGCACAGTGTACAAGGCTGTTATGGCTGATGGGGAGG TAATTGCCGTAAAAAAGCTGAAGTCTAGCGGTGCAGGAGCTAGTTCTGACAACAGCTTCCGTGCTGAGATATTGACCCTCGGAAAGATTAGACACCGTAA TATTGTTAAGCTCTTTGGATTCTGCTACCATCAGGACTACAATATCCTTCTATACGAATACATGCCAAATGGGAGCCTCGGAGAGCAACTTCATGGAAGT GTCCGAACATGTTCACTGGACTGGAATGCTAGATATAAAATTGGTCTTGGAGCAGCTGAGGGTTTATGCTATCTACATTATGATTGTAAGCCTAGAATCA TCCACCGTGATATAAAGTCGAACAATATTTTGTTGGATGAATTACTTCAGGCTCATGTAGGAGACTTCGGCTTGGCGAAGTTGATTGATTTTCCCCACTC CAAATCCATGTCTGCTGTTGCAGGTTCATATGGTTACATTGCCCCAGAATATGCTTACACATTGAAGGTGACTGAGAAATGTGACATCTATAGCTTTGGA GTAGTTCTACTGGAACTAATCACCGGGAAACCGCCTGTTCAATGTCTAGAGCAAGGAGGGGACCTGGTTACTTGGGTTAGAAGATCAATTCAGGATCCAG GGCCAACATCTGAGATATTTGACAGCAGGTTAGACTTGAGTCAGAAAAGCACCATAGAGGAGATGTCTTTAGTTCTCAAGATTGCATTATTCTGCACCAG CACATCTCCACTTAATAGGCCAACAATGAGAGAGGTCATTGCGATGATGATTGATGCTAGGGAGGCAGCAGTGAGTTCTCCATCAGAATCTCCAACGGCA GAATCCCCTTAG
AA sequence Show only first row Show all	>Potri.011G139700.1 pacid=42782067 polypeptide=Potri.011G139700.1.p locus=Potri.011G139700 ID=Potri.011G139700.1.v4.1 annot-version=v4.1 MMPSQLNSPIPYNLFCLVFLMLYFHFVFVISLNQEGAFLLEFTKSVIDPDNNLQGWNSLDLTPCNWKGVGCSTNLKVTSLNLHGLNLSGSLSTTASICHN LPGLVMLNMSSNFFSGPIPQYLDECHNLEILDLCTNRFRGEFPTHLCTLNTLRLLYFCENYIFGEISREIGNLTLLEELVIYSNNLTGTIPVSIRELKHL KVIRAGLNYFTGPIPPEISECESLEILGLAQNRFQGSLPRELQKLQNLTNLILWQNFLSGEIPPEIGNISNLEVIALHENSFSGFLPKELGKLSQLKKLY IYTNLLNGTIPRELGNCSSALEIDLSENRLSGTVPRELGWIPNLRLLHLFENFLQGSIPKELGELTQLHNFDLSINILTGSIPLEFQNLTCLEELQLFDN HLEGHIPYLIGYNSNLSVLDLSANNLVGSIPPYLCRYQDLIFLSLGSNRLFGNIPFGLKTCKSLKQLMLGGNLLTGSLPVELYQLQNLSSLEIHQNRFSG YIPPGIGKLGNLKRLLLSDNYFFGQIPPEIGNLTQLVAFNISSNGLSGGIPHELGNCIKLQRLDLSRNQFTGSLPEEIGWLVNLELLKLSDNRITGEIPS TLGSLDRLTELQMGGNLFSGAIPVELGQLTTLQIALNISHNRLSGTIPKDLGKLQMLESLYLNDNQLVGEIPASIGELLSLLVCNLSNNNLEGAVPNTPA FQKMDSTNFAGNNGLCKSGSYHCHSTIPSPTPKKNWIKESSSRAKLVTIISGAIGLVSLFFIVGICRAMMRRQPAFVSLEDATRPDVEDNYYFPKEGFSY NDLLVATGNFSEDAVIGRGACGTVYKAVMADGEVIAVKKLKSSGAGASSDNSFRAEILTLGKIRHRNIVKLFGFCYHQDYNILLYEYMPNGSLGEQLHGS VRTCSLDWNARYKIGLGAAEGLCYLHYDCKPRIIHRDIKSNNILLDELLQAHVGDFGLAKLIDFPHSKSMSAVAGSYGYIAPEYAYTLKVTEKCDIYSFG VVLLELITGKPPVQCLEQGGDLVTWVRRSIQDPGPTSEIFDSRLDLSQKSTIEEMSLVLKIALFCTSTSPLNRPTMREVIAMMIDAREAAVSSPSESPTA ESP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17230			Leucine-rich receptor-like pro...		Potri.011G139700 [exp]	0	1
AT5G47800			Phototropic-responsive NPH3 fa...		Potri.016G003700 [exp]	6.00	0.7959
AT2G18350	ZF_HD	ATHB24, ZHD6	ZINC FINGER HOMEODOMAIN 6, hom...		Potri.005G122500 [exp]	6.63	0.7488
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.002G048300 [exp]	6.92	0.7660
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Potri.005G097700 [exp]	8.83	0.7657
AT4G35900	bZIP	ATBZIP14, FD-1,...	Basic-leucine zipper (bZIP) tr...		Potri.005G243400 [exp]	9.16	0.7497
AT3G60670			PLATZ transcription factor fam...		Potri.002G144900 [exp]	10.58	0.7550
AT2G29970			Double Clp-N motif-containing ...		Potri.009G046700 [exp]	13.41	0.7694
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G127200 [exp]	14.07	0.7667
AT3G04900			Heavy metal transport/detoxifi...		Potri.004G144200 [exp]	16.34	0.8264
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	17.97	0.7517

Compare expression of checked genes

Potri.011G139700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.