Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PSPK3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53700 514 / 4e-180 PK3AT, WAG1 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) AT3G14370 493 / 6e-172 WAG2 Protein kinase superfamily protein (.1) AT2G34650 308 / 4e-100 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) AT5G40030 299 / 7e-96 Protein kinase superfamily protein (.1) AT5G47750 301 / 1e-95 PK5, D6PKL2 D6 protein kinase like 2 (.1) AT4G26610 298 / 1e-95 D6PKL1, AGC1-2 D6 protein kinase like 1 (.1) AT2G44830 304 / 5e-95 Protein kinase superfamily protein (.1) AT5G55910 296 / 5e-95 D6PK D6 protein kinase (.1) AT1G79250 293 / 4e-93 AGC1.7 AGC kinase 1.7 (.1.2) AT3G27580 293 / 1e-92 D6PKL3, ATPK7 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G435900 [exp] 740 / 0 AT1G53700 475 / 4e-165 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Potri.015G093400 [exp] 333 / 2e-109 AT2G26700 551 / 0.0 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.014G047500 [exp] 311 / 4e-98 AT2G44830 888 / 0.0 Protein kinase superfamily protein (.1) Potri.002G137700 [exp] 311 / 5e-98 AT2G44830 901 / 0.0 Protein kinase superfamily protein (.1) Potri.006G003800 [exp] 306 / 2e-97 AT5G47750 840 / 0.0 D6 protein kinase like 2 (.1) Potri.016G004900 [exp] 303 / 3e-96 AT5G47750 842 / 0.0 D6 protein kinase like 2 (.1) Potri.010G175900 [exp] 299 / 9e-95 AT1G79250 666 / 0.0 AGC kinase 1.7 (.1.2) Potri.006G114900 [exp] 307 / 2e-94 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Potri.009G146700 [exp] 305 / 2e-94 AT2G36350 621 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013715 [exp] 416 / 6e-142 AT2G26700 472 / 2e-164 PINOID2, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005583 [exp] 312 / 3e-103 AT1G53700 360 / 2e-122 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1) Lus10042911 [exp] 313 / 5e-101 AT2G44830 731 / 0.0 Protein kinase superfamily protein (.1) Lus10036150 [exp] 307 / 3e-100 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10016629 [exp] 306 / 1e-97 AT5G47750 798 / 0.0 D6 protein kinase like 2 (.1) Lus10035591 [exp] 305 / 6e-94 AT2G36350 746 / 0.0 Protein kinase superfamily protein (.1) Lus10008634 [exp] 304 / 1e-93 AT3G52890 806 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10006273 [exp] 299 / 2e-93 AT3G52890 604 / 0.0 KCBP-interacting protein kinase (.1.2) Lus10022272 [exp] 295 / 4e-93 AT3G27580 684 / 0.0 D6 PROTEIN KINASE LIKE 3, Protein kinase superfamily protein (.1.2) Lus10020571 [exp] 293 / 2e-91 AT2G36350 612 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G139800.1 pacid=42780556 polypeptide=Potri.011G139802.1.p locus=Potri.011G139800 ID=Potri.011G139800.1.v4.1 annot-version=v4.1 ATGGATGTTGAAGAAACCCAGCTTCATCGCTACCCATCTGATACCGATCTTGATTTCAGCTTCAACTCTACCACCACTGACCGCACTTTCGCCTCCTCAA GTGCTCGCTCTAGTCTTGCTCGTTCTAGTCTAACTCTCAGCTTCAACGACCGCCTCTCCACCACCTCCACCACAACAACAACGACCACCATCAAAAACTC TCTCCACCATCGTAAATGTGACCCACATTGGTCTGCTATAAAAACAGCCACCAACCTCTCTACAGATAGCAAACTCCACCTCCGACACCTCAAGCTCCTC CGCCACCTCGGCACAGGAAATCTTGGCCGTGTCTTTCTTTGCCAACTTAGAGACTGCAACAATGCAAACTTTGCTTTGAAAGTTATAGATAAAGATTCCT TAACCAATAAAAAACTATCTCATGTTCAGATGGAAGGTGAGATTCTCTCCATGCTGGACCACCCTTTCTTGCCTACACTCTATGCCCATCTCGAAGTCTC TCATTACACCTGTCTTTTGATTGATTACTGTCCTAATGGAGACCTCCACTCTTTGCTACGTAAACAGCCTGGTAATCGGTTACCAGTTCAGGCTGTTAAG TTCTTTGCTGCTGAGGTCTTGGTGGCTTTGGAGTATTTACATGCCGTAGGTGTTGTTTACCGGGATCTAAAGCCGGAGAACATATTACTACGTGAAGATG GTCATATAATGTTATCTGACTTCGATTTGTGTTTCAAAGCTGATGTTGTCCCCACTTTTGACAGAAGGGTCCACAAAAAAAGAATGGCGGGGTCCACGAG AAGAGGAGGTAGTTGTTTCGGCACGGTTAATCGGAGGGGAGTAGAGGAGGAGGAAGTGGTGGAGGAAGAGTTTGTGGCGGAGCCCACGGCAGCTTCGTCG AGATCCTGTGTTGGGACCCACGAGTACCTGGCTCCCGAGTTGTTGTCTGGAAACGGTCATGGTAATGGAGTGGATTGGTGGGCTTTTGGGGTTTTGGTCT ATGAATTATTGTATGGAACGACACCGTTCAAGGGAGGGAGTAAAGAGAGCACCTTGCGCAATATAGCATCGAGCAAGCACGTGACCTTCCGTGTGATGGA AGGGGAGGGTAAAGGGATGGAAGAGGCCAGGGATTTGGTTGAGAAGCTGTTAGTCAAGAACCCAAGGCAGAGGCTAGGGTGCATCAAGGGCGCCACAGAA ATTAAGAGACACCCCTTTTTTGATGGGATCAAGTGGCCTTTGATAAGGAACTATAAGCCACCGGAGGTTCGTGGCCTCGTGGCCAAAAAGGGGAAGAGCC ACCCAAGTGGTCACTTGCTAGGGAGTGTTTCTTCCCCTCGGAGGAAGTGTTGGTGGAGGTTGTGGAAGAACGGTGGTAGCGGGCTTGGAAACTTGCTGAG AAGTAAAGGATCCAGTCCAAGATATTATCCTCTGAGCAACAGCCAACATTACAATGGTAATTACCATCATTATAAGGTCAGGAAAGGTGCCTAG
AA sequence Show only first row Show all	>Potri.011G139800.1 pacid=42780556 polypeptide=Potri.011G139802.1.p locus=Potri.011G139800 ID=Potri.011G139800.1.v4.1 annot-version=v4.1 MDVEETQLHRYPSDTDLDFSFNSTTTDRTFASSSARSSLARSSLTLSFNDRLSTTSTTTTTTTIKNSLHHRKCDPHWSAIKTATNLSTDSKLHLRHLKLL RHLGTGNLGRVFLCQLRDCNNANFALKVIDKDSLTNKKLSHVQMEGEILSMLDHPFLPTLYAHLEVSHYTCLLIDYCPNGDLHSLLRKQPGNRLPVQAVK FFAAEVLVALEYLHAVGVVYRDLKPENILLREDGHIMLSDFDLCFKADVVPTFDRRVHKKRMAGSTRRGGSCFGTVNRRGVEEEEVVEEEFVAEPTAASS RSCVGTHEYLAPELLSGNGHGNGVDWWAFGVLVYELLYGTTPFKGGSKESTLRNIASSKHVTFRVMEGEGKGMEEARDLVEKLLVKNPRQRLGCIKGATE IKRHPFFDGIKWPLIRNYKPPEVRGLVAKKGKSHPSGHLLGSVSSPRRKCWWRLWKNGGSGLGNLLRSKGSSPRYYPLSNSQHYNGNYHHYKVRKGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.011G139800 [exp]	0	1	Pt-PSPK3.2
AT5G20820			SAUR-like auxin-responsive pro...		Potri.006G137000 [exp]	2.00	0.8080	SAUR6
AT5G44680			DNA glycosylase superfamily pr...		Potri.008G081000 [exp]	3.46	0.7829
AT2G26070		RTE1	REVERSION-TO-ETHYLENE SENSITIV...		Potri.018G053900 [exp]	11.22	0.6850
AT5G50335			unknown protein		Potri.012G094000 [exp]	12.96	0.7153
AT2G27510		ATFD3	ferredoxin 3 (.1)		Potri.010G239100 [exp]	14.14	0.6628	PETF.5
AT1G75640			Leucine-rich receptor-like pro...		Potri.002G027400 [exp]	14.42	0.7342
AT4G13540			unknown protein		Potri.008G174400 [exp]	23.36	0.7218
AT1G67030	C2H2ZnF	ZFP6	zinc finger protein 6 (.1)		Potri.014G123700 [exp]	28.98	0.6534
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Potri.001G435900 [exp]	30.19	0.7022	Pt-PSPK3.1
AT4G09530			SAUR-like auxin-responsive pro...		Potri.019G082100 [exp]	33.22	0.6883

Compare expression of checked genes

Potri.011G139800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.