Plant FIBer expression Database

Pt-AERO1.2 (Potri.011G139900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-AERO1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72280 636 / 0 AERO1 endoplasmic reticulum oxidoreductins 1 (.1)
AT2G38960 562 / 0 AERO2 endoplasmic reticulum oxidoreductins 2 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G436100
[exp]
786 / 0 AT1G72280 630 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023292
[exp]
598 / 0 AT1G72280 658 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
Lus10038515
[exp]
598 / 0 AT1G72280 656 / 0.0 endoplasmic reticulum oxidoreductins 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04137 ERO1 Endoplasmic Reticulum Oxidoreductin 1 (ERO1)
Representative CDS sequence
>Potri.011G139900.1 pacid=42782068 polypeptide=Potri.011G139900.1.p locus=Potri.011G139900 ID=Potri.011G139900.1.v4.1 annot-version=v4.1
ATGGTGAAGAAAAACGAGAGCTTTAAGCCCAAACAAGAAAGCAAGAAGGAGAGAAAGAGATGGAGTTCATGGGGGTTGATCGGGGCATTAGTGGCAGTTG
CTCTGGCAGTTGTTGTAGCTGTTACTGTTTCTCTAATGACCGCTTCAAAGATTGGTTCTTTGATTAACAGCAATAACAAGTCATGTCAATGCCCTTCTTC
TCAGGATTCAGGGAAATATAAGGGAGTGATTGAGGATTGTTGTTGTGATTATGAGAGTGTAGATAGTGTAAATGGAGAGGTGTTGCATCCTTTGCTTCAA
GAGCTTGTTACAACACCGTTTTTTCGGTATTTTAAGGTTAAATTGTGGTGCGACTGCCCTTTCTGGCCCGATGATGGTATGTGCCGCTTGCGTGATTGCA
GTGTTTGTGAATGCCCAGAAAACGAGTTCCCAGAACCTCTTAAGAAGCCATTCCTCTATGGTCTTCCAGCAGATGATGTGGCGTGTCAAGAGGGAAATCC
ACAGGCTGCTGTTGATCGCACATTAGACAGTAGAGCTTTTAAAGGATGGATAGAGACAGATAATCCATGGACAAATGATGACGAGACTGATAATGATGAG
ATGACATATGTGAATCTCTTATTGAATCCGGAACGCTACACTGGTTATGTTGGTCCATCAGCTAGAAGAATATGGGATGCTGTTTACTCAGAGAATTGCC
CAAAATATCCATCGGGAGAGATGTGCCAGGAGAAAAAAGTATTATACAAATTAATATCTGGCCTCCACTCTTCCATTTCAATCCATATAGCTGTTGACTA
TCTTCTTGATGAGAGCACCAATAAGTGGGGTCAGAACCCGGAATTGATGTATGATCGTGTTCTCAGATATCCTGATCGTGTCAGAAACTTGTACTTCACA
TTCCTCTTTGTTTTGCGTGCCGTGGCTAAAGCAGCAGATTACCTGGAGCAGGCTGAGTATGACACTGGTAACCATACAGAGGACCTAGAGACACAGTCTT
TAGTGAGGCAGTTACTTCACAACCCCAAACTCCAAGCTGCTTGTCCTCTTCCATTTGATGAAGCTAAGTTATGGCAAGGTCAAAGTGGACCTGAACTGAA
GCAGCAAATTCAAAAGCAATTCAGAAATATTAGTGCATTGATGGACTGTGTTGGCTGTGAGAAGTGTAGACTCTGGGGGAAACTTCAGGTTCTTGGCCTT
GGTACTGCATTGAAGATCCTCTTTTCTGTTGATGGTCAAAATCAGCCAAGCGAATCTCTCCAACTACAACGAAATGAAGTGATTGCTCTGGTAAATTTGC
TCAATCGACTCTCAGAATCTATAAAATACGTTTGTGAACAGGGACCTTCAATTGAGAAGACCATGGAGAGACAGATATCAGATCCTTCTGAAACCAAGTA
TGCTAGTACATGA
AA sequence
>Potri.011G139900.1 pacid=42782068 polypeptide=Potri.011G139900.1.p locus=Potri.011G139900 ID=Potri.011G139900.1.v4.1 annot-version=v4.1
MVKKNESFKPKQESKKERKRWSSWGLIGALVAVALAVVVAVTVSLMTASKIGSLINSNNKSCQCPSSQDSGKYKGVIEDCCCDYESVDSVNGEVLHPLLQ
ELVTTPFFRYFKVKLWCDCPFWPDDGMCRLRDCSVCECPENEFPEPLKKPFLYGLPADDVACQEGNPQAAVDRTLDSRAFKGWIETDNPWTNDDETDNDE
MTYVNLLLNPERYTGYVGPSARRIWDAVYSENCPKYPSGEMCQEKKVLYKLISGLHSSISIHIAVDYLLDESTNKWGQNPELMYDRVLRYPDRVRNLYFT
FLFVLRAVAKAADYLEQAEYDTGNHTEDLETQSLVRQLLHNPKLQAACPLPFDEAKLWQGQSGPELKQQIQKQFRNISALMDCVGCEKCRLWGKLQVLGL
GTALKILFSVDGQNQPSESLQLQRNEVIALVNLLNRLSESIKYVCEQGPSIEKTMERQISDPSETKYAST

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72280 AERO1 endoplasmic reticulum oxidored... Potri.011G139900
[exp]
0 1 Pt-AERO1.2
AT1G71490 Tetratricopeptide repeat (TPR)... Potri.019G074700
[exp]
3.16 0.8398
AT3G07180 GPI transamidase component PIG... Potri.002G244801
[exp]
4.89 0.8343
AT3G21110 PUR7, ATPURC PURIN C, purin 7 (.1.2) Potri.017G051500
[exp]
7.34 0.8459
AT3G22330 ATRH53, PMH2 putative mitochondrial RNA hel... Potri.006G024100
[exp]
8.00 0.8654
AT3G55510 RBL REBELOTE, Noc2p family (.1) Potri.008G043400
[exp]
8.60 0.8510
AT3G07180 GPI transamidase component PIG... Potri.002G245000
[exp]
20.49 0.8239
AT2G40360 Transducin/WD40 repeat-like su... Potri.003G009600
[exp]
25.23 0.8324
AT5G59980 Polymerase/histidinol phosphat... Potri.009G025800
[exp]
25.69 0.8229
AT3G10630 UDP-Glycosyltransferase superf... Potri.008G018200
[exp]
26.94 0.8234
AT4G19650 Mitochondrial transcription te... Potri.012G118200
[exp]
27.71 0.8094

Potri.011G139900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.