Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17220 1159 / 0 FUG1 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) AT4G11160 354 / 2e-108 Translation initiation factor 2, small GTP-binding protein (.1) AT1G76820 108 / 7e-24 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76810 106 / 4e-23 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G21160 100 / 6e-21 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 91 / 4e-18 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT2G27700 84 / 1e-16 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2) AT5G13650 65 / 2e-10 SVR3 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) AT5G08650 59 / 1e-08 Small GTP-binding protein (.1) AT5G39900 55 / 2e-07 Small GTP-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G436300 [exp] 1548 / 0 AT1G17220 1076 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Potri.001G095500 [exp] 344 / 7e-105 AT4G11160 828 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Potri.012G039200 [exp] 100 / 5e-21 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.019G103600 [exp] 99 / 1e-20 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.006G053000 [exp] 65 / 2e-10 AT5G13650 1123 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Potri.001G305300 [exp] 60 / 8e-09 AT5G08650 1063 / 0.0 Small GTP-binding protein (.1) Potri.002G215900 [exp] 59 / 2e-08 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 58 / 2e-08 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.017G079800 [exp] 54 / 4e-07 AT5G39900 999 / 0.0 Small GTP-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013713 [exp] 1110 / 0 AT1G17220 1267 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10005581 [exp] 992 / 0 AT1G17220 1080 / 0.0 fu-gaeri1, Translation initiation factor 2, small GTP-binding protein (.1) Lus10033933 [exp] 322 / 1e-96 AT4G11160 927 / 0.0 Translation initiation factor 2, small GTP-binding protein (.1) Lus10012856 [exp] 107 / 4e-23 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10030500 [exp] 106 / 8e-23 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10023474 [exp] 69 / 9e-14 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10035968 [exp] 67 / 5e-11 AT5G08650 1102 / 0.0 Small GTP-binding protein (.1) Lus10012200 [exp] 62 / 2e-09 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10007535 [exp] 61 / 3e-09 AT5G13650 1121 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10015364 [exp] 59 / 2e-08 AT5G39900 1082 / 0.0 Small GTP-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01926 [poplar] [flax] MMR_HSR1 50S ribosome-binding GTPase CL0023 [poplar] [flax] PF11987 [poplar] [flax] IF-2 Translation-initiation factor 2
Representative CDS sequence Show only first row Show all	>Potri.011G140100.4 pacid=42782371 polypeptide=Potri.011G140100.4.p locus=Potri.011G140100 ID=Potri.011G140100.4.v4.1 annot-version=v4.1 ATGGGGTCTATGGTGGTTTTAGTAGGCAGCATGCCATCTTTGGCTTCCCTTATGAGTTTAGGGAGCTTGAGTGTGTCTACAGCTAGCTCTAGTTGTGTTG AATCTTCTTCATATTCAGTTTTAAAGAGAGTTTCTTTATCAAAAAGGAGTCTTAGGAAGGCTAAAAGATGGGATTGTGTGTGTAAATATTCAGTTACTAC CACTGATTTCATTGCTGAGCAAGGCAATGCTGTGTCACTTGATTCTAGTAGTAGTACAATTAGAGGAGGAAGTGATGGTGATAGTGAGGTTGTACTTAAG CCTGCTCCAAAGCCTGTGTTAAAATCTCCAGCTGGTTCTAAGGATGAAACCCCTTTGAGTATGAATTCTGTTGGGTGGGGTTCTTCAAGTGCTGGTGGGG ATTCTGATGGTGAAAGGTCGGATGAGGAGGAAGGAGAGAGGAATAAGGTGATCGAGTCACTTGGTGAGGTTTTGGAGAAAGCTGAAAAGCTTGAAACTTC AAAACTGAGCCAAGTGGGTGGTAGTGCTAGTAGTAATAGGAAACAGAATGGGGTTGTAAATAAAATGATTTCACCTAATGTGGGTAATGATTCGAGAAAT GTTAATTCATCGGCTGCTAATATGAAAACTAAAACTTTAAAAAGTGTGTGGCGGAAAGGAGACTCTGTGGCTGCATTGCCGAAGGTTGTCAAGGAAGTTC CAAAGGCTAGTAATAGGGTTATCAAAGGGGAACCTAAAACAGTAGAAGGAGCAAAGCTAGAATCTCAATCAACTGTACCATTGAAGCCTCCTCAGCCACC TCTAAGACCTCAACCGAAGTTACAGGGCAAGCCATCTGTAGCTCCTCCACCTATGATCAAGAAACCTGTTATTTTGAAGGATGTGGGGGCTGCTCCAAAG TCTCCAGTTAAAGTTGAAACTGGCTCAAGAGCTCCGCAAAGTAAAGGACAGCCAATTTTGGTTGACAAATTTGCACGCAAGAAGCCGGTTGTTGACCCTG TGATTGCACAGGCTGTATTAGCCCCTATAAAACCAGGAAAGGGCCCTGCTCCTGGGAAGTACAGAGACCGAAAGAAAAGTGTTTCACCTGGAACACCAAG AAGGCGGATGGTGGATGATGATGTTGAGATTCCTGATGAGGAGCTCAATGTTTCTATTCCCGGTGCAGCTAGCGGGAGAAAAGGGAGGAAATGGACTAAA GCCAGTAGGAAGGCAGCTAAACTCCAGGCTGCCAGAGATGCAGCTCCTGTCAAAGTAGAGATTTTAGAGGTTGGGGAAAAAGGTATGTCAATTGAAGAGC TAGCCTACAATTTGACAATCGGTGAAGGTGAAATTCTTGGGTTTCTGTACTCAAAGGGGATTAAGCCTGATGGGGTGCAAACTTTGGACAAAGACATGGT AAAGATGATATGTAAGGAGCATGAGGTGGAGGCCATAGATGCTGATCCAGTAAAATTTGAAGAAATGGCAAAAAAGAATGAAATTCTTGATGAAGACGAC CTGGACAAACTACAAGAGAGGCCTCCTGTCCTTACTATAATGGGTCATGTAGACCATGGCAAGACAACCCTATTGGATCATATTCGTAAAAGCAAGGTGG CTGCCTCAGAAGCTGGTGGGATTACACAAGGAATTGGAGCATATAAAGTTATGATACCTGTGGATGGCAAGTTGCAACCATGTGTTTTCCTTGATACTCC TGGGCACGAGGCATTTGGAGCAATGAGAGCCCGTGGAGCGAGGGTGACTGACATTGCTATTATTGTGGTGGCTGCTGATGATGGGATTCGTCCTCAGACT AAGGAGGCCATAGCTCATGCCAAAGCAGCTGGAGTGCCCATTGTAATCACAATAAATAAGATAGATAAAGATGGAGCCAATCCAGAAAGAGTCATGCAAG AGCTCTCTTCTATTGGTCTCATGCCAGAGGACTGGGGTGGTGATGTCCCAATGGTTCAGATCAGCGCTCTCAAGGGGGAAAATATAGATGATTTGTTGGA AACTGTTATGCTTGTGGCAGAGTTACAAGAATTGAAGGCTAATCCAGATAGAAATGCAAAGGGCACTGTTATTGAGGCAGGTCTTGATAAATCTAAAGGG CCAGTAGCAACTTTTATTGTACAGAATGGCACCCTGAAAAGAGGGGATGTAGTGGTTTGTGGACAAGCCTTTGGAAAGGTGCGGGCTTTATTTGATGATG GTGGAAAACGAGTTGATGAAGCTGGACCATCTATACCTGTACAGGTTATTGGTTTGAGTAATGTACCAATTGCTGGTGATGAATTTGAGGTTGTTGCCTC CCTTGATATTGCTCGTGAAAAGGCAGAGAAACGTGCAGAATCATTATGGAATGAACGCATATCGGCCAAGGCTGGAGATGGGAAGGTGACCCTTTCTTCC TTAGCTTCAGCTGTCTCAGCAGGAAAGCTATCCGGATTAGACTTGCACCAGCTGAATATAATAATGAAAGTCGATCTTCAGGGATCTATTGAAGCTATCA GGCAAGCTTTACAAGTGCTCCCTCGAGATAATGTCACTTTGAAGTTCCTCTTGCAAGCTACAGGAGATGTAAGCAACAGCGATGTTGATCTTGCTGTTGC TAGTGAAGCTATAATTTTAGGATTCAATGTCAAAGCTCCAGGTTCTGTCAAAAGCTACGCAGAAAGAAAAGGTGTTGAGATTCGGCTATATAGAGTTATC TACGAACTCATTGATGATGTGCGAAATGCAATGGAAGGACTTCTGGAGCCTGTGGAGGAACAAGAGATAATTGGCTCAGCAGAAGTCCGGGCAGTATTTA GCAGCGGCAGTGGTCGTGTTGCCGGATGCATGGTAACAGAAGGCAAAATAGTAAAAGGCTGTGGAATTAGGATTGTCCGAAATAGAAAAACAGTCCATGT TGGTGTCATTGATTCACTGAAACGTGTTAAGGAAATAGTGAAGGAGGTAAATGCCGGACTAGAATGTGGTATTGGGGCGGAAGATTATGATGATTGGGAG GAAGGTGATACTATAGAGGCCTTCAACACGGTAGAGAAGAAGCGAACCCTTGAAGAGGCCTCAGCCTCCATGGCAGCTGCACTGGAAGAGGCAGGAATCA ACTTATAG
AA sequence Show only first row Show all	>Potri.011G140100.4 pacid=42782371 polypeptide=Potri.011G140100.4.p locus=Potri.011G140100 ID=Potri.011G140100.4.v4.1 annot-version=v4.1 MGSMVVLVGSMPSLASLMSLGSLSVSTASSSCVESSSYSVLKRVSLSKRSLRKAKRWDCVCKYSVTTTDFIAEQGNAVSLDSSSSTIRGGSDGDSEVVLK PAPKPVLKSPAGSKDETPLSMNSVGWGSSSAGGDSDGERSDEEEGERNKVIESLGEVLEKAEKLETSKLSQVGGSASSNRKQNGVVNKMISPNVGNDSRN VNSSAANMKTKTLKSVWRKGDSVAALPKVVKEVPKASNRVIKGEPKTVEGAKLESQSTVPLKPPQPPLRPQPKLQGKPSVAPPPMIKKPVILKDVGAAPK SPVKVETGSRAPQSKGQPILVDKFARKKPVVDPVIAQAVLAPIKPGKGPAPGKYRDRKKSVSPGTPRRRMVDDDVEIPDEELNVSIPGAASGRKGRKWTK ASRKAAKLQAARDAAPVKVEILEVGEKGMSIEELAYNLTIGEGEILGFLYSKGIKPDGVQTLDKDMVKMICKEHEVEAIDADPVKFEEMAKKNEILDEDD LDKLQERPPVLTIMGHVDHGKTTLLDHIRKSKVAASEAGGITQGIGAYKVMIPVDGKLQPCVFLDTPGHEAFGAMRARGARVTDIAIIVVAADDGIRPQT KEAIAHAKAAGVPIVITINKIDKDGANPERVMQELSSIGLMPEDWGGDVPMVQISALKGENIDDLLETVMLVAELQELKANPDRNAKGTVIEAGLDKSKG PVATFIVQNGTLKRGDVVVCGQAFGKVRALFDDGGKRVDEAGPSIPVQVIGLSNVPIAGDEFEVVASLDIAREKAEKRAESLWNERISAKAGDGKVTLSS LASAVSAGKLSGLDLHQLNIIMKVDLQGSIEAIRQALQVLPRDNVTLKFLLQATGDVSNSDVDLAVASEAIILGFNVKAPGSVKSYAERKGVEIRLYRVI YELIDDVRNAMEGLLEPVEEQEIIGSAEVRAVFSSGSGRVAGCMVTEGKIVKGCGIRIVRNRKTVHVGVIDSLKRVKEIVKEVNAGLECGIGAEDYDDWE EGDTIEAFNTVEKKRTLEEASASMAAALEEAGINL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.011G140100 [exp]	0	1
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Potri.009G141300 [exp]	1.00	0.9900
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.001G436300 [exp]	2.44	0.9754
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	2.82	0.9758
AT5G03900			Iron-sulphur cluster biosynthe...		Potri.004G090400 [exp]	4.00	0.9747
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	4.47	0.9739
AT1G64860		SIGB, SIG2, SIG...	RNApolymerase sigma subunit 2,...		Potri.013G075400 [exp]	4.89	0.9735
AT3G53920		SIG3, SIGC	SIGMA FACTOR 3, RNApolymerase ...		Potri.006G234400 [exp]	5.09	0.9673
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	5.65	0.9706	RSH1.2
AT5G35170			adenylate kinase family protei...		Potri.018G113400 [exp]	7.74	0.9703
AT4G15530		PPDK	pyruvate orthophosphate dikina...		Potri.010G027800 [exp]	9.00	0.9704

Compare expression of checked genes

Potri.011G140100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.