Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17200 223 / 3e-74 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) AT3G14380 148 / 3e-45 Uncharacterised protein family (UPF0497) (.1) AT5G54980 89 / 5e-22 Uncharacterised protein family (UPF0497) (.1) AT4G16442 68 / 4e-14 Uncharacterised protein family (UPF0497) (.1) AT2G35760 67 / 1e-13 Uncharacterised protein family (UPF0497) (.1) AT1G14160 56 / 8e-10 Uncharacterised protein family (UPF0497) (.1) AT2G27370 55 / 4e-09 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT4G15620 54 / 5e-09 Uncharacterised protein family (UPF0497) (.1) AT4G15630 50 / 9e-08 Uncharacterised protein family (UPF0497) (.1) AT1G03700 49 / 2e-07 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G436400 [exp] 311 / 7e-109 AT1G17200 245 / 1e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Potri.010G208300 [exp] 102 / 1e-27 AT5G54980 176 / 2e-56 Uncharacterised protein family (UPF0497) (.1) Potri.008G052451 [exp] 72 / 9e-17 AT5G54980 88 / 2e-23 Uncharacterised protein family (UPF0497) (.1) Potri.006G016900 [exp] 70 / 9e-15 AT2G35760 250 / 4e-85 Uncharacterised protein family (UPF0497) (.1) Potri.016G008800 [exp] 69 / 2e-14 AT2G35760 253 / 2e-86 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 66 / 3e-13 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.012G104300 [exp] 64 / 9e-13 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 60 / 4e-11 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.010G207000 [exp] 55 / 2e-09 AT3G55390 243 / 8e-83 Uncharacterised protein family (UPF0497) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026196 [exp] 231 / 9e-78 AT1G17200 241 / 1e-81 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10042471 [exp] 228 / 1e-76 AT1G17200 242 / 6e-82 Uncharacterised protein family (UPF0497) (.1), Uncharacterised protein family (UPF0497) (.2) Lus10021788 [exp] 92 / 2e-23 AT5G54980 177 / 6e-57 Uncharacterised protein family (UPF0497) (.1) Lus10034604 [exp] 91 / 9e-23 AT5G54980 176 / 1e-56 Uncharacterised protein family (UPF0497) (.1) Lus10005154 [exp] 64 / 2e-12 AT3G55390 233 / 2e-78 Uncharacterised protein family (UPF0497) (.1) Lus10001709 [exp] 58 / 3e-10 AT3G55390 231 / 1e-77 Uncharacterised protein family (UPF0497) (.1) Lus10012562 [exp] 55 / 3e-09 AT4G15620 77 / 1e-17 Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 53 / 2e-08 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1) Lus10037160 [exp] 53 / 2e-08 AT1G14160 214 / 9e-71 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 52 / 2e-08 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [poplar] [flax] Marvel-like PF04535 [poplar] [flax] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Potri.011G140200.1 pacid=42780985 polypeptide=Potri.011G140200.1.p locus=Potri.011G140200 ID=Potri.011G140200.1.v4.1 annot-version=v4.1 ATGGAGAAGAGGGACAAGGGAAGTTCTCCCATGGCAACGATGATGGGGTCAAGAGATGAGAATGAAGATGTGGAAAACACCACGCGAACAGCCGAGACTA TGCTGCGTTTGGTGCCAATGGCTTTGTGTGTCTCAGCACTTGTGGTCATGCTTAAGAATACTCAAACTAATGACTATGGCTCGCTTTCTTATTCAGATCT TGGAGCTTTCAGGTATTTGGTGCACGTCAATGGCATTTGTGCTGGCTATTCCCTTCTTTCAGCGGTCATTGTAGCCATGCCTCGAGCGTCCACCATGCCT CGAGCATGGGCCTTTTTCTTGCTTGACCAGGTGTTAACCTATGTAATTCTTGCCGCCGGCACGGTATCGACGGAGGTGCTGTACTTGGCAAGCAAGGGGG ACACAACCATAACTTGGAGTGAGGCTTGTGTGTCATTTGGTGGATTTTGTCACAAGGCCTTGATATCTATAGTCATTACATTTGTCGTAGTGATTTGCTA TGCAGCTCTTTCACTCTTATCGTCCTACAAACTTTTCAGCAAATATGATTCCCCGGTCCTGACCTATCCAGGCAAGGGTATTGAGATTGCCACCTTCCAT GGCTGA
AA sequence Show only first row Show all	>Potri.011G140200.1 pacid=42780985 polypeptide=Potri.011G140200.1.p locus=Potri.011G140200 ID=Potri.011G140200.1.v4.1 annot-version=v4.1 MEKRDKGSSPMATMMGSRDENEDVENTTRTAETMLRLVPMALCVSALVVMLKNTQTNDYGSLSYSDLGAFRYLVHVNGICAGYSLLSAVIVAMPRASTMP RAWAFFLLDQVLTYVILAAGTVSTEVLYLASKGDTTITWSEACVSFGGFCHKALISIVITFVVVICYAALSLLSSYKLFSKYDSPVLTYPGKGIEIATFH G

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17200			Uncharacterised protein family...		Potri.011G140200 [exp]	0	1
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	1.73	0.9659
					Potri.007G088800 [exp]	2.00	0.9733
AT1G77330			2-oxoglutarate (2OG) and Fe(II...		Potri.002G078600 [exp]	4.00	0.9553	ACO1
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Potri.012G019500 [exp]	5.47	0.9529
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Potri.001G361600 [exp]	5.74	0.9129	Pt-WRK.2
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.004G210600 [exp]	7.74	0.9472
AT4G32285			ENTH/ANTH/VHS superfamily prot...		Potri.006G066900 [exp]	7.74	0.9392
AT1G54520			unknown protein		Potri.008G152400 [exp]	8.83	0.9074
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	10.19	0.9348
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	10.58	0.9429	Pt-FLA14.3

Compare expression of checked genes

Potri.011G140200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.