Plant FIBer expression Database

Potri.011G140300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G18510 39 / 8e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042971
[exp]
39 / 9e-06 AT3G18510 82 / 1e-22 unknown protein
Lus10032475
[exp]
39 / 1e-05 AT3G18510 80 / 8e-22 unknown protein
PFAM info
Representative CDS sequence
>Potri.011G140300.1 pacid=42781973 polypeptide=Potri.011G140300.1.p locus=Potri.011G140300 ID=Potri.011G140300.1.v4.1 annot-version=v4.1
ATGGCGTTGAATTCACAGAGATGGGGTTATGTAAGGATCATAACTGGCACAATTCTTGGTGGGGTTCTTGGGTTCTATGTTATGCACCGGGTGGAAGTCA
GCTACAAGGAAAAGATGAAGGAGAGATTGAGAGAGTATGAAAAGGAATTGAAGAAGAAAGAGGAGTTGAAACAGCTCGAGGAATCCATGTAG
AA sequence
>Potri.011G140300.1 pacid=42781973 polypeptide=Potri.011G140300.1.p locus=Potri.011G140300 ID=Potri.011G140300.1.v4.1 annot-version=v4.1
MALNSQRWGYVRIITGTILGGVLGFYVMHRVEVSYKEKMKERLREYEKELKKKEELKQLEESM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G18510 unknown protein Potri.011G140300
[exp]
0 1
AT2G44660 ALG6, ALG8 glycosyltransferase... Potri.014G053200
[exp]
4.89 0.8198
AT2G17800 ARAC1, ATGP2, A... RHO-RELATED GTPASES FROM PLANT... Potri.005G110700
[exp]
9.00 0.8724 Pt-RHO1.2
AT5G11280 unknown protein Potri.006G251600
[exp]
15.29 0.8096
AT2G43780 unknown protein Potri.019G096500
[exp]
16.06 0.8358
AT4G01897 unknown protein Potri.002G191200
[exp]
16.24 0.8433
AT2G26850 F-box family protein (.1) Potri.016G035900
[exp]
17.49 0.8103
AT2G43810 Small nuclear ribonucleoprotei... Potri.008G078400
[exp]
18.38 0.8035
AT1G53750 RPT1A regulatory particle triple-A 1... Potri.018G056600
[exp]
35.91 0.8249
AT1G26690 emp24/gp25L/p24 family/GOLD fa... Potri.018G145544
[exp]
37.68 0.8207
AT3G01790 Ribosomal protein L13 family p... Potri.001G334000
[exp]
43.11 0.8205

Potri.011G140300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.