Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20140 290 / 4e-84 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G33170 282 / 1e-81 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G46330 282 / 2e-81 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G44700 281 / 6e-81 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G47570 266 / 2e-76 Leucine-rich repeat protein kinase family protein (.1) AT5G63930 263 / 4e-75 Leucine-rich repeat protein kinase family protein (.1) AT1G73080 261 / 3e-74 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT5G07280 259 / 3e-73 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G17230 254 / 8e-72 Leucine-rich receptor-like protein kinase family protein (.1) AT4G36180 253 / 3e-71 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068500 [exp] 576 / 0 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G150100 [exp] 449 / 8e-144 AT3G47570 503 / 4e-161 Leucine-rich repeat protein kinase family protein (.1) Potri.003G150000 [exp] 445 / 2e-142 AT3G47570 506 / 4e-162 Leucine-rich repeat protein kinase family protein (.1) Potri.016G029900 [exp] 357 / 2e-109 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G075000 [exp] 297 / 2e-86 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G156200 [exp] 292 / 1e-84 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.019G120700 [exp] 291 / 4e-84 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.019G120733 [exp] 291 / 4e-84 AT1G35710 796 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.004G065400 [exp] 286 / 7e-83 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027688 [exp] 293 / 6e-86 AT4G20140 707 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10036251 [exp] 293 / 8e-85 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10004046 [exp] 272 / 4e-78 AT4G08850 773 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10019036 [exp] 271 / 4e-78 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10039030 [exp] 271 / 1e-77 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10019035 [exp] 266 / 2e-76 AT4G08850 861 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2) Lus10011386 [exp] 265 / 3e-75 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002293 [exp] 259 / 2e-73 AT1G35710 781 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10037955 [exp] 251 / 2e-73 AT3G47570 462 / 6e-151 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 259 / 5e-73 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G140901.1 pacid=42780329 polypeptide=Potri.011G140901.1.p locus=Potri.011G140901 ID=Potri.011G140901.1.v4.1 annot-version=v4.1 ATGCGGAACGGTTGCTTCCTGATCCCTTTCACAGTGATACTATGGAGCAGTTTTGTTGTGACCTTGGTGGCTAATAGAGTAACCAGCATTACCACTGATC AAGATGCTCTTCTTGCCTTGAAAGACCACATCGTTAATGACCCTCAAAACCTGCTGACCACCAACTGGACTGCTACTACCTCTGTTTGCGACTGGGTTGG TGTCACTTGTGGAACTCGCCACCGTAGGGTCAGAGCCTTGAAACTCTCTCACATGGGTCTTACAGGTACCATCCCTCCACATTTGGGAAACTTGTCCTTC CTAGTTTTTGCTTCCTTCTATAATAATAGTTTCCGTGGCTCTCTCCCGGACGAGTTGGCTAAGTTACGTAGGCTAAAATACTTCACCATACAAAAGAACT ACTTCGGCGGGGAGATCCCATCATGGCTTGGGTCCTTTACTAGGCTCCACACGTTGTCTCTAGCTAACAACAGTTTCACTGGTGCGATTCCACCGTCATT GTTCCACCTCTCAGAGCTAGATGGCTTGGACTTGTCCAACAATGATCTTCAAGGGCACATTCCAAGAGAGATTGGCAAGCTTTCCAAGTTGAGGCTACTG TATTTGCGTCATACTGGCCTTTCAGGTTCCATCCCCTCCGCAGTCTTCAACATTTCTTCATTGCAGGACATTGATCTTACTGGAAACATGCTCTCAGGTT CCTTGCCCTCAGCTAATGTCACCATGTCCTCACTTCGGATTATTGGCTTTGGTCTCAATAATCTAACTGGTAGCCTGCCATCAAATTTGTTCAACAATCT TCCCAATCTGGAAGGATTGTACTTGAGAAAGATACACAAAGATATCAGAAATTTGACAGTGCTTGAACAGCTATATCTTGGCTACAACAAATTCAATGAT GCAGAAATGCTGTTGTCCATCAGCGATGTTCTCAGTTTGGAGTTACTTAACCTAGAAAATAGTGGCCTAACTGGTCCAATTCCCTCTGCTATTGGAAATC TGACCCTTCTATGGAATATTGGCCTAATGGATAACAACCTGACAGGAACAATTCCACCGGAGATTGGTAACCTAGTGAATCTAGAGATAATCTCTTTGTC AATGAACAGGATTGGTGGCCCAATTCCCGTCAGAATCTTTAACATCTCAACATTGAGATCTATCGAAATGACGGGAAATTATCTCTCAGGCCATCTTCCA TCAAGCATAGGTCTCCAGCTTCCAAATCTTGAGCTACTTATCGTAGGAAGAAACGAACTCAGTGGTCCATTCCCTGTCTCTCTCTCCAACGCTTCTGAAC TCCTTACACTGGAATTGAGTTCAAACTTTTTCTTTGGTCCTATTCCTGATGCATTTGGCGATGATTTAAGGAACCTAAGATATCTCAATCTGGGGAATAA TAATTTTACCGGCAACTCTCTATCTTCAGAGTTGAATTTCTTAACGTCTTTGACAAATTCCAAGAATTTGAGACTGGTATTACTGAGCCTTAATCCATTG AAGGGGACTCTCCCGATTTCAGTAGGAAACCTCTCCTCTTCCCTCGAAAACTTTGTTGCTGATAGTTGCCAGATTAAAGGCAGTATACCCGAAGGAATTG GCAACTTGAGTAACTTGGTACGTTTGAGTCTACAAGACAATGATCTAAAGGGAACCATTCCAACTACAATTGGAAGATTAAGGAAGCTCCAATCTTTATC ATTTTCAGGAAATAATTTAGAAGGGTCCACCCCATCTGATTTGTGTGATATAGAGAGTTTGTCTTTCTTATATCTTGGGGAGAATAAGCTAGTTGGATCA GTGCCTTCATGTTTAGGCAATGTCAGTTCTCTAAGAGAGTTATCAATGGGCGCCAACAATCTTACATCCACAATACCTTCGACCTTATGGAGACTAAAAG ATATCCAGCTACTAGAGTTATCATCAAATTCTTTAAGTGGCTCTCTCCCACTAGATATCAGCAATCTGAAGGTTGTAAGGCATTTAGATATATCAGGAAA TCAATTATCAGGTGAAATCCCATCTAGCATCGGGGACCTCAATGATCTAGCTTATCTTTCTTTGTCCAATAATAGATTGCAGGGGCCTATTTCTCGATCA TTTGGTGACATGGTAAGCTTGGAATTCTTAGATTTATCAAGAAATAATCTCTCAGGAGAAATTCCCAAGGACATGGAGAAACTTACATATCTTAAATATT TCAATGTGTCTTTCAATGGACTTCAAGGGGAAATACCTGGTGGAGGACCATTTTAA
AA sequence Show only first row Show all	>Potri.011G140901.1 pacid=42780329 polypeptide=Potri.011G140901.1.p locus=Potri.011G140901 ID=Potri.011G140901.1.v4.1 annot-version=v4.1 MRNGCFLIPFTVILWSSFVVTLVANRVTSITTDQDALLALKDHIVNDPQNLLTTNWTATTSVCDWVGVTCGTRHRRVRALKLSHMGLTGTIPPHLGNLSF LVFASFYNNSFRGSLPDELAKLRRLKYFTIQKNYFGGEIPSWLGSFTRLHTLSLANNSFTGAIPPSLFHLSELDGLDLSNNDLQGHIPREIGKLSKLRLL YLRHTGLSGSIPSAVFNISSLQDIDLTGNMLSGSLPSANVTMSSLRIIGFGLNNLTGSLPSNLFNNLPNLEGLYLRKIHKDIRNLTVLEQLYLGYNKFND AEMLLSISDVLSLELLNLENSGLTGPIPSAIGNLTLLWNIGLMDNNLTGTIPPEIGNLVNLEIISLSMNRIGGPIPVRIFNISTLRSIEMTGNYLSGHLP SSIGLQLPNLELLIVGRNELSGPFPVSLSNASELLTLELSSNFFFGPIPDAFGDDLRNLRYLNLGNNNFTGNSLSSELNFLTSLTNSKNLRLVLLSLNPL KGTLPISVGNLSSSLENFVADSCQIKGSIPEGIGNLSNLVRLSLQDNDLKGTIPTTIGRLRKLQSLSFSGNNLEGSTPSDLCDIESLSFLYLGENKLVGS VPSCLGNVSSLRELSMGANNLTSTIPSTLWRLKDIQLLELSSNSLSGSLPLDISNLKVVRHLDISGNQLSGEIPSSIGDLNDLAYLSLSNNRLQGPISRS FGDMVSLEFLDLSRNNLSGEIPKDMEKLTYLKYFNVSFNGLQGEIPGGGPF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Potri.011G140901 [exp]	0	1
AT1G02260			Divalent ion symporter (.1)		Potri.017G141950 [exp]	16.73	0.8326
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.004G181900 [exp]	33.22	0.8117
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.001G374300 [exp]	49.74	0.7678
AT1G76430		PHT1;9	phosphate transporter 1;9 (.1)		Potri.005G256100 [exp]	61.48	0.7923	11
AT4G23220		CRK14	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030012 [exp]	75.09	0.7836
AT1G02260			Divalent ion symporter (.1)		Potri.017G141700 [exp]	85.14	0.7825
AT4G23880			unknown protein		Potri.003G140200 [exp]	106.05	0.7695
AT4G23880			unknown protein		Potri.003G140266 [exp]	109.04	0.7685
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028500 [exp]	118.06	0.7642
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.008G205200 [exp]	132.81	0.7580	Pt-IFS1.42

Compare expression of checked genes

Potri.011G140901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.