Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 256 / 2e-77 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 254 / 1e-76 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 243 / 9e-73 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 239 / 3e-71 EFR EF-TU receptor (.1) AT5G39390 223 / 8e-69 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 217 / 2e-63 Leucine-rich receptor-like protein kinase family protein (.1) AT3G47110 214 / 3e-62 Leucine-rich repeat protein kinase family protein (.1) AT1G01540 191 / 1e-56 Protein kinase superfamily protein (.1.2) AT4G02010 187 / 2e-53 Protein kinase superfamily protein (.1) AT4G01330 179 / 3e-52 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G068500 [exp] 459 / 2e-153 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G029900 [exp] 407 / 3e-134 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G150000 [exp] 310 / 3e-97 AT3G47570 506 / 4e-162 Leucine-rich repeat protein kinase family protein (.1) Potri.003G150100 [exp] 292 / 2e-90 AT3G47570 503 / 4e-161 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 277 / 2e-85 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044500 [exp] 273 / 1e-83 AT3G47570 764 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 268 / 4e-82 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G037400 [exp] 266 / 8e-81 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G100901 [exp] 255 / 8e-81 AT5G39390 394 / 9e-133 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037840 [exp] 274 / 5e-84 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 253 / 1e-75 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004827 [exp] 251 / 3e-75 AT3G47570 812 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 250 / 3e-75 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 251 / 4e-75 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 249 / 1e-74 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 247 / 4e-74 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030630 [exp] 240 / 1e-73 AT3G47570 426 / 8e-137 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 245 / 2e-73 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030636 [exp] 244 / 2e-73 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G141001.1 pacid=42781453 polypeptide=Potri.011G141001.1.p locus=Potri.011G141001 ID=Potri.011G141001.1.v4.1 annot-version=v4.1 ATGCAAGTCCAACCATGTAAGACTAGAGGTCGTCATCAATCGAAGAAAGCAACTGCAAATGTATTTAAGTATATTTTACCAGCGATTGGAGCTGTAGGAA TGGCTATGGCCTTTACTGTCCTCTACGTAATGCGTGGCAGAAGGAATGAGAAGAAAAAACAAGGAGATTTTCCAGATTTAGCAACATGGAGAAGAGTTTC ATTTCAAGAGCTTGAGAGAGCAACCGATGGATTTGACGAGGTCAACTTGCTAGGTACGGGGAGCTTTGGCTCAGTTTACAAGGGGTTGTTCTCAGATGGA GCGAACGCTGCTGTAAAGGTTTTTCATTCGCAGCTAGAGGGAGCATTCAAGAGTTTTGATGTTGAGTGTGAGGTGTTGCGCAGCATCCGCCATCGAAATC TAGTGAAAATCATCACAAGTTGCTGCAACATTGACTTCAAAGCCTTGGTGCTTGAGTTCATGCCTAATTGGAGCCTTGAAAAGTGGCTGTATTCCCACAA CTATTTCTTGGATCTCCTACAGAGGTTGAACATTATGATTGATGTTGCTTCGGCACTTGAATACCTTCATCATGGCAATGCAACACTCGTGGTCCACTGT GATTTAAAGCCTAGCAATATCCTGCTTGATGAGAATATGGTCGCTCATGTGAGTGATTTTGGCATTGCCAAACTCCTCGGCGAAGGGCACTCCATCACAC AAACAATGACACTAGCTACTGTTGGTTACATGGCACCAGAGTATGGATCCGAAGGGATTGTTTCTGTCAAGGGTGATGTGTATAGCTACGGTATTCTGCT GATGGAAACTTTTACTAGGAGAAAGCCCACCGATGAAATGTTTACAGGAGAAACGAACTTGAAACTTTGGGTCAAAGATTCATTGCCTGGTGCAGTAACT CAAATTGCAGATGCTAACTTGAAAGATCATGGACAATATCCTGCTGCTAAAAAAGATTGTCTATCATCCATTCTGGAATTGGCCCTGGCGCCCTGCAATG TTCTGCAGAACAGCCTGAGGAGAGGATAG
AA sequence Show only first row Show all	>Potri.011G141001.1 pacid=42781453 polypeptide=Potri.011G141001.1.p locus=Potri.011G141001 ID=Potri.011G141001.1.v4.1 annot-version=v4.1 MQVQPCKTRGRHQSKKATANVFKYILPAIGAVGMAMAFTVLYVMRGRRNEKKKQGDFPDLATWRRVSFQELERATDGFDEVNLLGTGSFGSVYKGLFSDG ANAAVKVFHSQLEGAFKSFDVECEVLRSIRHRNLVKIITSCCNIDFKALVLEFMPNWSLEKWLYSHNYFLDLLQRLNIMIDVASALEYLHHGNATLVVHC DLKPSNILLDENMVAHVSDFGIAKLLGEGHSITQTMTLATVGYMAPEYGSEGIVSVKGDVYSYGILLMETFTRRKPTDEMFTGETNLKLWVKDSLPGAVT QIADANLKDHGQYPAAKKDCLSSILELALAPCNVLQNSLRRG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.011G141001 [exp]	0	1
AT2G17450		RHA3A	RING-H2 finger A3A (.1)		Potri.007G057300 [exp]	32.01	0.6990
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	39.64	0.7312
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.012G049101 [exp]	42.82	0.7277
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.018G037400 [exp]	53.60	0.7200
AT4G10260			pfkB-like carbohydrate kinase ...		Potri.019G063600 [exp]	60.33	0.7198
					Potri.012G026150 [exp]	66.48	0.7170
AT2G02850		ARPN	plantacyanin (.1)		Potri.001G209300 [exp]	67.34	0.7142	Pt-BABL.1
AT3G07230			wound-responsive protein-relat...		Potri.014G191300 [exp]	89.69	0.7068
					Potri.006G195500 [exp]	90.79	0.7023
					Potri.003G098500 [exp]	92.44	0.7040

Compare expression of checked genes

Potri.011G141001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.