Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33020 295 / 2e-89 AtRLP24 receptor like protein 24 (.1) AT3G11010 295 / 5e-89 AtRLP34 receptor like protein 34 (.1) AT3G05660 294 / 7e-89 AtRLP33 receptor like protein 33 (.1) AT2G32660 287 / 7e-89 AtRLP22 receptor like protein 22 (.1) AT4G13810 290 / 9e-89 AtRLP47 receptor like protein 47 (.1.2) AT3G05650 294 / 1e-88 AtRLP32 receptor like protein 32 (.1) AT2G33060 288 / 3e-87 AtRLP27 receptor like protein 27 (.1) AT2G25440 285 / 6e-87 AtRLP20 receptor like protein 20 (.1) AT2G33050 282 / 6e-85 AtRLP26 receptor like protein 26 (.1) AT5G27060 285 / 8e-85 AtRLP53 receptor like protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G437800 [exp] 834 / 0 AT2G32660 314 / 6e-99 receptor like protein 22 (.1) Potri.001G437600 [exp] 827 / 0 AT2G32660 306 / 5e-96 receptor like protein 22 (.1) Potri.001G437700 [exp] 563 / 0 AT1G47890 397 / 4e-122 receptor like protein 7 (.1) Potri.001G389100 [exp] 360 / 2e-112 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.001G128400 [exp] 330 / 1e-100 AT1G45616 498 / 2e-159 receptor like protein 6 (.1) Potri.016G127101 [exp] 315 / 2e-95 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 315 / 2e-95 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G126900 [exp] 313 / 7e-95 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.012G005600 [exp] 307 / 2e-92 AT1G45616 379 / 3e-115 receptor like protein 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002214 [exp] 274 / 3e-84 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10003389 [exp] 269 / 2e-78 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10032335 [exp] 251 / 9e-73 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10024721 [exp] 250 / 1e-72 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 253 / 4e-72 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10011064 [exp] 251 / 4e-72 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10042239 [exp] 247 / 2e-70 AT1G45616 395 / 1e-121 receptor like protein 6 (.1) Lus10026415 [exp] 237 / 6e-67 AT1G47890 424 / 3e-131 receptor like protein 7 (.1) Lus10016402 [exp] 231 / 7e-67 AT1G47890 313 / 4e-94 receptor like protein 7 (.1) Lus10019693 [exp] 227 / 1e-65 AT2G33050 295 / 1e-91 receptor like protein 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G141100.1 pacid=42780910 polypeptide=Potri.011G141100.1.p locus=Potri.011G141100 ID=Potri.011G141100.1.v4.1 annot-version=v4.1 ATGAGAGATTATTGTAGAATTATAGCTTGTTGCTTTTTATTCCTACCCTTCTTATCTTCAGCAAATTCTACTTTCACATCTTTGCCACAAACTTCTTCTC ACCCTTTCTCAGGCCATCGTTGCGTTGGCAGTGAAAAAACAGCCTTGCTCCGACTCAAAAGGGATTTATCTGCGGCCAAACCAGAATCCACTCTTCCTCT CCAGCCCGCCTCGGGTTCTTTGCTTACTTCATGGAAGCCTAACACTGATTGTTGCTCCTGGGAAGGTGTTACTTGTCATGGAGTCACAACTGATCATGTG ATTGGCATTAAACTCAGTGGTCACAACCTTTCTGGTCTTGTTAACTCAACCGAGCTTCTTAACCTCCCCTACCTTGAAAGGCTGAATCTTGTCAACTGCA ATATTGGAGAAATCCCAAGTTTCCTTCGAAAAGTAAGTAGGTTGGTTGAGCTCGACCTTTCTAACAACCAAATCCATGGCCAAGTGCCTAAATGGATTTG GCAGTTTGAAAGGCTAGTTTACTTGAATTTGTCTAACAATTTCTTGAATGGATTTGAAGCACCATCTTCTGATCCGTTTTTTAGCTCCTTGACCTTTCTT GATCTTAGCTCCAATTTGTTAGAAGGATCAATCCCAATTCCACCGCCCTCTATCAGCTTCCTCTCGCTTGCTAAGAACAAGCTCACTGGAGAGATTCCAG AATCATTATGCAGGATAAGAAATCTAACAATCTTGGATCTATGCTACAATTCTATGACAGGTCAAATTCCAAAATGTCTCGAGGCTCTTGCTGCTACTCT CACCGTACTAAATCTACGGGAGAATAAATTCTTTGGGTTGATGCTCTGGAATTTCACCGAAGACTGCAGCCTAAAGACACTCAACTTATACGGGAATCAG TTGACAGGGAAAATTCCCAGTTCTCTGAAGCATTGCAGATGCCTTGAAGTTATAGACCTTGGAGATAACCAGATTAATGACACATTTCCTTTCTGGTTAG GGATGCTTCCCAGCTTGCAAGTTCTCATCCTACAATCAAATAGATTGCACGGTCCCATTGGCCAGCCATTGACATCAAATGACTTCCCAATGCTTCAAAT CTTTGATCTCTCCTCGAATCATTTCACCGGAAATCTGCCACTGGATTACTTTGCAATATGGAAGTCAATGAGGGTAAAGTTCAATGGGTCACTATTGTAC TTGGGATCTTACTATTATAGGGATTGGATGTCAATTACAAGCAAGGGCCATAGAATGGATAATATCAACATCTTAACAATTTTCACTATCCTAGACCTCT CAAACAATCTTTTTGAAGGAGAGATTCCTGAAGAGATTGGCGACCACAAATTACTAGATGTACTCAACATGTCTAGAAATAACCTGATAGGTGAGATCCC AACATCTCTTTCGAAGTTGACATTGCTTGAGTCCTTAGACCTCTCAAAAAACAAGCTCACAGGCGCGATCCCGATGCAACTAATAAGCTTGACATTCCTA TCGGTTCTTAACCTTTCTTATAATAGATTAGAGGGGAAGATACCTGTAGGGAATCAATTTTCTACCTTCACTAGTGATTCCTATCAGGAAAACTTAGGGT TGTGTGGGTTTCCATTGTCCAATAAATGTGATGACGTTGAAGATCAACAGCCACCAGGAGCACAAGAAGAAAGCATCCTTTCGGAGTCAGGTAGTCTGTT CAGTTGGAAATCTGCTTTGCTTGGATACGGATGTGCGGTGCCTGTGGGAGTTGCCATTGGTCACATGTTGTTTTGGAGGAACAAGAGATGCAGTAAATTG ATTGAACAATCATTCAAGGCAAAGAATCATCGGCGCCAGAGCAATGAACGGAATCGAAAAAGAAGATGA
AA sequence Show only first row Show all	>Potri.011G141100.1 pacid=42780910 polypeptide=Potri.011G141100.1.p locus=Potri.011G141100 ID=Potri.011G141100.1.v4.1 annot-version=v4.1 MRDYCRIIACCFLFLPFLSSANSTFTSLPQTSSHPFSGHRCVGSEKTALLRLKRDLSAAKPESTLPLQPASGSLLTSWKPNTDCCSWEGVTCHGVTTDHV IGIKLSGHNLSGLVNSTELLNLPYLERLNLVNCNIGEIPSFLRKVSRLVELDLSNNQIHGQVPKWIWQFERLVYLNLSNNFLNGFEAPSSDPFFSSLTFL DLSSNLLEGSIPIPPPSISFLSLAKNKLTGEIPESLCRIRNLTILDLCYNSMTGQIPKCLEALAATLTVLNLRENKFFGLMLWNFTEDCSLKTLNLYGNQ LTGKIPSSLKHCRCLEVIDLGDNQINDTFPFWLGMLPSLQVLILQSNRLHGPIGQPLTSNDFPMLQIFDLSSNHFTGNLPLDYFAIWKSMRVKFNGSLLY LGSYYYRDWMSITSKGHRMDNINILTIFTILDLSNNLFEGEIPEEIGDHKLLDVLNMSRNNLIGEIPTSLSKLTLLESLDLSKNKLTGAIPMQLISLTFL SVLNLSYNRLEGKIPVGNQFSTFTSDSYQENLGLCGFPLSNKCDDVEDQQPPGAQEESILSESGSLFSWKSALLGYGCAVPVGVAIGHMLFWRNKRCSKL IEQSFKAKNHRRQSNERNRKRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33020		AtRLP24	receptor like protein 24 (.1)		Potri.011G141100 [exp]	0	1
AT3G10120			unknown protein		Potri.006G213100 [exp]	3.46	0.8085
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023800 [exp]	8.71	0.8323
					Potri.019G017739 [exp]	10.09	0.7646
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168400 [exp]	11.66	0.8209
AT2G31130			unknown protein		Potri.004G055300 [exp]	11.74	0.8233
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023900 [exp]	16.43	0.8035
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	16.94	0.8061
AT1G25420			Regulator of Vps4 activity in ...		Potri.010G124100 [exp]	16.97	0.7855
AT5G41380			CCT motif family protein (.1)		Potri.003G130500 [exp]	23.66	0.7644
AT4G38210		ATHEXPALPHA1.23...	EXPANSIN 20, expansin A20 (.1)		Potri.009G169500 [exp]	29.83	0.7322	PtrEXPA21,ATEXPA20.1

Compare expression of checked genes

Potri.011G141100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.