Plant FIBer expression Database

Potri.011G141200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G15150 295 / 2e-101 HPY2, ATMMS21 HIGH PLOIDY2, A. THALIANA METHYL METHANE SULFONATE SENSITIVITY 21, RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015968
[exp]
291 / 1e-99 AT3G15150 267 / 2e-90 HIGH PLOIDY2, A. THALIANA METHYL METHANE SULFONATE SENSITIVITY 21, RING/U-box superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF11789 zf-Nse Zinc-finger of the MIZ type in Nse subunit
Representative CDS sequence
>Potri.011G141200.5 pacid=42780666 polypeptide=Potri.011G141200.5.p locus=Potri.011G141200 ID=Potri.011G141200.5.v4.1 annot-version=v4.1
ATGGCATCAACCTCCGCTCCTCGCGGCGGCGGCGATGTTCCTTCCGCCTCCGGAATAATGACAACCTCTGCTTCGATGCTCTGCTCGGAGAACCAATCTC
TCATCGTTGAAATGAGGAAGGTTTTCAATATGATGAAGGAGATCGCAGTTGATCTTGAGAGAGAGAACGAGTCTGCAAAAGTGAATGAACTTGAAAACAC
TGTTGCTGAGTTGTTAGCGACTTATGAAGATTGTACGTATCAGACTTCTGCAATTGAATCTGTTGGTAACACATACCAGCCTGGGGCAGAACTAACCGAT
TTCAAAAAGTTGCTTAACGATGAGTTTATGAAGTTTAAGGGTAATAAATCCTCAGCCCCACAGAATCATCCACTACTGCGTCAATTTCGAGAAGCTGTCT
GGAATGTTCATCATTCAGGACAACCAATGCCGGGTGAAGAGCACGAGGACATTGTAATGACAAGTACCCAGTCCACCATTTTGAATATCACTTGCCCATT
GAGTGGAAAGCCAATTACTGAACTAGCAGAACCAGTTCGCGGTGTGGATTGCAAGCATGTGTATGAAAAGAAAGCAATCATGGGCTACATATCCCTAAAT
GCACAAGCCAAATGCCCCGTAACAGGCTGTCCCAGGTATTTGCGGCAAGATAAAGTGGTCTCTGATCCGCTATTACTTGTTGAAATTGAGGAAATGCGCT
CAATGAGCAAAGAAAATATGACTGCTACTCTGGTAGAAGATTTCACAATGACAGACGATGAAGAGGAGGATTGA
AA sequence
>Potri.011G141200.5 pacid=42780666 polypeptide=Potri.011G141200.5.p locus=Potri.011G141200 ID=Potri.011G141200.5.v4.1 annot-version=v4.1
MASTSAPRGGGDVPSASGIMTTSASMLCSENQSLIVEMRKVFNMMKEIAVDLERENESAKVNELENTVAELLATYEDCTYQTSAIESVGNTYQPGAELTD
FKKLLNDEFMKFKGNKSSAPQNHPLLRQFREAVWNVHHSGQPMPGEEHEDIVMTSTQSTILNITCPLSGKPITELAEPVRGVDCKHVYEKKAIMGYISLN
AQAKCPVTGCPRYLRQDKVVSDPLLLVEIEEMRSMSKENMTATLVEDFTMTDDEEED

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G15150 HPY2, ATMMS21 HIGH PLOIDY2, A. THALIANA METH... Potri.011G141200
[exp]
0 1
AT2G39840 TOPP4 type one serine/threonine prot... Potri.016G142700
[exp]
3.16 0.8948
AT5G25240 unknown protein Potri.006G259300
[exp]
5.47 0.8921
AT1G63260 TET10 tetraspanin10 (.1.2.3) Potri.001G107200
[exp]
9.53 0.8741
AT1G15950 IRX4, ATCCR1, C... IRREGULAR XYLEM 4, cinnamoyl c... Potri.001G045500
[exp]
11.31 0.8531
AT2G35658 unknown protein Potri.003G081900
[exp]
15.29 0.8549
AT4G22560 unknown protein Potri.001G121600
[exp]
15.55 0.8574
AT1G34350 unknown protein Potri.019G085500
[exp]
16.43 0.8795
AT4G21160 ZAC, AGD12 ARF-GAP domain 12, Calcium-dep... Potri.011G098500
[exp]
17.02 0.8579
AT2G41430 LSR1, CID1, ERD... CTC-Interacting Domain 1, dehy... Potri.016G041600
[exp]
17.54 0.8428 ERD15.2
AT4G32330 TPX2 (targeting protein for Xk... Potri.018G027500
[exp]
18.33 0.8443

Potri.011G141200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.