Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15140 397 / 7e-139 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G030900 [exp] 99 / 6e-23 AT3G15140 94 / 3e-21 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Potri.003G194300 [exp] 99 / 8e-23 AT3G15140 96 / 8e-22 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009194 [exp] 355 / 6e-123 AT3G15140 298 / 1e-100 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10005381 [exp] 96 / 4e-22 AT3G15140 90 / 3e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) Lus10024133 [exp] 96 / 9e-22 AT3G15140 91 / 6e-20 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [poplar] [flax] RNase_H PF00929 [poplar] [flax] RNase_T Exonuclease
Representative CDS sequence Show only first row Show all	>Potri.011G141300.1 pacid=42780254 polypeptide=Potri.011G141300.1.p locus=Potri.011G141300 ID=Potri.011G141300.1.v4.1 annot-version=v4.1 ATGTCCTTCCCTAGGATTCCTCTGTCTAGGGTTCCTTCATATCTCCACAACAGCAACAACTGCTTTCACCTTCTCCACCCGCCCTTTATCCCGGTATCCA AAACCCCATCATTACCCACTTACCAAACTGCCCGTACATACACTGATTTCAATTCCCAAACACAAACACAACCCCCTCTTTCACTACCCTCTTTAATACC TTCTCCTCCTGTTAATAATCCCAATGCCACTCATAGATGGAAGCCTATGTGCTTATATCACACACATGGCAAGTGTACTAAGATTGATGACCCTGTTCAT GTAGAGAGGTTTAATCATGATTGCTCTAGGGATTTTCAAGTGAGTGCTGCTGATTTTGAACGAAAAAGGCCTCAAGATTTTGACTTTTTCTTGGTGTTTG ATTTGGAAGGGAAAGTTGAGATTCTTGAGTTTCCTGTACTGATAATCGATGCAAAAACTATGGGTGTTGTCGATTTGTTTCACAGGTTTGTAAGGCCTAC AGCAATGAGTGAGGAAAGAGTAAATGAATATATTTACAACAAATATGGAAAGTTTGGAGTTGATCGTGTGTGGCATGATACAGCTCTCCCATTTAATGAA GTTCTTCAACAATTTGAATCATGGTTGACGCAACATAATTTGTGGGAAAAGACTCGTGGTGGGCGCCTTAATCGAGCAGCTTTCGTAACTTGTGGAAATT GGGATGTGAAAACACAGGTCCCTCATCAATGCTCCGTGTCCAAGTTGAAGCTCCCCCCATACTTTATGGAGTGGATCAACCTGAAAGATGTCTATCAAAA TTTTTATAATCCAAGAAATGAGGCCAGAGGAATGAGGACAATGATGTCGCAGCTTAAAATACCAATGGTGGGAAGTCACCATCTTGGTCTTGATGACACA AAGAATATAGCAAGAGTCTTGTTACGGATGCTAGCTGATGGCGCAGTTTTGCCGATTACCGCCCGGAGGAAGCCTGAGTCACCAGGAAGTGTTAATTTTC TGTACAAGAATCGCATATAA
AA sequence Show only first row Show all	>Potri.011G141300.1 pacid=42780254 polypeptide=Potri.011G141300.1.p locus=Potri.011G141300 ID=Potri.011G141300.1.v4.1 annot-version=v4.1 MSFPRIPLSRVPSYLHNSNNCFHLLHPPFIPVSKTPSLPTYQTARTYTDFNSQTQTQPPLSLPSLIPSPPVNNPNATHRWKPMCLYHTHGKCTKIDDPVH VERFNHDCSRDFQVSAADFERKRPQDFDFFLVFDLEGKVEILEFPVLIIDAKTMGVVDLFHRFVRPTAMSEERVNEYIYNKYGKFGVDRVWHDTALPFNE VLQQFESWLTQHNLWEKTRGGRLNRAAFVTCGNWDVKTQVPHQCSVSKLKLPPYFMEWINLKDVYQNFYNPRNEARGMRTMMSQLKIPMVGSHHLGLDDT KNIARVLLRMLADGAVLPITARRKPESPGSVNFLYKNRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15140			Polynucleotidyl transferase, r...		Potri.011G141300 [exp]	0	1
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.004G126500 [exp]	12.80	0.8253
AT2G21195			unknown protein		Potri.019G071800 [exp]	17.23	0.8739
AT3G12650			unknown protein		Potri.009G063700 [exp]	33.04	0.8255
AT5G61190	C2H2ZnF		putative endonuclease or glyco...		Potri.017G091700 [exp]	40.43	0.8218
AT3G07440			unknown protein		Potri.002G250500 [exp]	114.60	0.8094
AT1G73380			unknown protein		Potri.004G067200 [exp]	124.29	0.8227
AT5G62950			RNA polymerase II, Rpb4, core ...		Potri.005G067600 [exp]	150.56	0.8027
AT3G23560		ALF5	ABERRANT LATERAL ROOT FORMATIO...		Potri.011G117300 [exp]	152.91	0.8152	Pt-HLS3.1

Compare expression of checked genes

Potri.011G141300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.