Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79030 749 / 0 Chaperone DnaJ-domain superfamily protein (.1) AT1G16680 735 / 0 Chaperone DnaJ-domain superfamily protein (.1) AT5G49580 327 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) AT1G59980 59 / 4e-09 GPS4, ARL2 ,ATDJC39 gravity persistence signal 4, ARG1-like 2 (.1) AT1G77020 56 / 5e-08 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G68370 53 / 3e-07 ARG1 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) AT2G25560 52 / 1e-06 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G24120 51 / 2e-06 ARL1 ARG1-like 1 (.1) AT5G18140 50 / 2e-06 Chaperone DnaJ-domain superfamily protein (.1) AT5G49060 50 / 2e-06 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438300 [exp] 936 / 0 AT1G79030 783 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.010G148900 [exp] 325 / 1e-102 AT5G49580 613 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G101800 [exp] 189 / 1e-54 AT5G49580 355 / 1e-116 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G138100 [exp] 56 / 2e-08 AT5G23590 255 / 2e-84 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 56 / 4e-08 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.002G105500 [exp] 55 / 9e-08 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.008G123200 [exp] 54 / 2e-07 AT1G68370 670 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.010G122300 [exp] 53 / 3e-07 AT1G68370 671 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1) Potri.009G119800 [exp] 53 / 3e-07 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032666 [exp] 836 / 0 AT1G79030 772 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10043089 [exp] 393 / 8e-134 AT1G79030 398 / 6e-136 Chaperone DnaJ-domain superfamily protein (.1) Lus10017085 [exp] 330 / 3e-104 AT5G49580 670 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10037801 [exp] 283 / 5e-85 AT5G49580 595 / 0.0 Chaperone DnaJ-domain superfamily protein (.1) Lus10017472 [exp] 60 / 2e-09 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 60 / 2e-09 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10037502 [exp] 57 / 2e-08 AT5G49060 340 / 7e-116 Heat shock protein DnaJ, N-terminal with domain of unknown function (DUF1977) (.1) Lus10017980 [exp] 57 / 2e-08 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10041972 [exp] 57 / 2e-08 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10005113 [exp] 57 / 2e-08 AT1G68370 688 / 0.0 ALTERED RESPONSE TO GRAVITY 1, Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF14901 [poplar] [flax] Jiv90 Cleavage inducing molecular chaperone
Representative CDS sequence Show only first row Show all	>Potri.011G142000.4 pacid=42781691 polypeptide=Potri.011G142000.4.p locus=Potri.011G142000 ID=Potri.011G142000.4.v4.1 annot-version=v4.1 ATGGAGGATATTGGGCTGGTTAAGCGTGGGCGGAAATGGCTGCAAACGCAGAAACATGCCTATTGGCGGGCGAAAACTACAGTGGGGTGTTGGCGGGACA AGATTGGTATGTTTATAGAGAGGCATTGGCCTATGGTGTGCAATGGATGTGCAAGATTTGGAAGATTGATGCGTTTGTTGTTGATTTATTGGAAAGATTG TGTTGTGAGGGGTTTTAATTCAGTTATCAAATTGGGTTCGGCGGCTTTGCTTCTTATAATGTGGAGTTGCTTTCTTAGTCTCACTTCAATGTCTTCCTTG CTTTATGTACTACTTTGTATGGGAGCTGCGGGAGCTGCTGTTCAGTATTTGGGCTACACTCCTGGACTTTTTATTGTAGGACTGTTTGCTATTTTAATTT TATGGATGTATGCTAACTTTTTGATAACTGGAACATTATTTATAGTTGGAGGTTATTTGTTCTCTCAAAATCATGCACGGCTAGTAGTCTTAATGGCGAC TATATATGCTATTTATTGTGTGAAAGTTCGAGTTGGATGGCATGGTGTTTTCCTATCAATAAACCTAACATTTTTCTCAAACGATATTTTAAATTTCCTG CTTCAATGGTGTGATAATGTCAGGGAAAGCACCCAATTTGAAGAACACAAGGAAACTGAAACAGTTCTGGAAGATGAGTTTTTTTCTGAGGAATGTGAAT TCTCGATTCCTGCTGATGAATCTGAGAAGGTGCAGTCATGCAAATCATCTAGCAAACCAGCTGCAAGCGCGTCTGTTGTGAATAACCAAAAAGAGTCTTC TGCTAGAAAAGTAGTTGTAGAAGAAGAAACAAGCTCAGCTGATGAGATGAAAAGAATATTAGATAGTGGAGGTCATTATGAAGCACTGGGATTTCCTCGC CACAAGCGAATTGATGTTGCAATTTTGAAGAAGGAATACCGGAAAAAGGCCATGCTTGTCCATCCTGATAAAAATATGGGAAGCCCTTTAGCAAGTGAAT CATTTAAGAAACTTCAATGTGCTTATGAGGTTTTGTCTGATTCTGTGAAGAAGAGGGACTATGATGAGCAATTGAGAAAGGAAGAATCTAGGAGTAGGAG TGTATGCGAGAAATCCCATAGTACTTCACGTCAGCAGGATAATTCAGATTACTGCTCTGAGGAATCGAGGTGGATACATTGCACCAAGTGTGGCAATTCA CATATATGGGTGTGTACTAATAGGAATAAGGCCAAGGCAAGATGGTGCCAGGATTGCCGCCAATATCATCAAGCCAAGGATGGAGATGGATGGGTTGAAT ATAAAGGCTCATTGATCTTTGACAAGCCTCAGAAGATGGAAATTCCGCGTGCATTTGTTTGTGGTGAGAGCAAAATCTTTGATGTATCAGAATGGGCTAT TTGCCAGGGGATGCTATGCAGGCCCAACACCCATAGGCCAAGCTTCCATGTAAACATGGTTGGCTTGGAGAAGACAAAATGGTCCAACTCAAGCAAATAT CCATGGGATTTGGATGCTGAAATGATGGATGAGAAGGAAGAAGAATTTGAGGTGAGGCTTCAGCAGGCTTTTGGCCGTTTTTGTGAGACCTCCAAACGTA GAAAGAGTTGGAGTCCTTTTAAGTTGCCCCAAAAGAAAGGGAAGAAGCAATGGCGAAGAACATCAACTTGA
AA sequence Show only first row Show all	>Potri.011G142000.4 pacid=42781691 polypeptide=Potri.011G142000.4.p locus=Potri.011G142000 ID=Potri.011G142000.4.v4.1 annot-version=v4.1 MEDIGLVKRGRKWLQTQKHAYWRAKTTVGCWRDKIGMFIERHWPMVCNGCARFGRLMRLLLIYWKDCVVRGFNSVIKLGSAALLLIMWSCFLSLTSMSSL LYVLLCMGAAGAAVQYLGYTPGLFIVGLFAILILWMYANFLITGTLFIVGGYLFSQNHARLVVLMATIYAIYCVKVRVGWHGVFLSINLTFFSNDILNFL LQWCDNVRESTQFEEHKETETVLEDEFFSEECEFSIPADESEKVQSCKSSSKPAASASVVNNQKESSARKVVVEEETSSADEMKRILDSGGHYEALGFPR HKRIDVAILKKEYRKKAMLVHPDKNMGSPLASESFKKLQCAYEVLSDSVKKRDYDEQLRKEESRSRSVCEKSHSTSRQQDNSDYCSEESRWIHCTKCGNS HIWVCTNRNKAKARWCQDCRQYHQAKDGDGWVEYKGSLIFDKPQKMEIPRAFVCGESKIFDVSEWAICQGMLCRPNTHRPSFHVNMVGLEKTKWSNSSKY PWDLDAEMMDEKEEEFEVRLQQAFGRFCETSKRRKSWSPFKLPQKKGKKQWRRTST

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	0	1
AT3G61960			Protein kinase superfamily pro...		Potri.014G107000 [exp]	2.82	0.7300
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	4.89	0.7615
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.014G077200 [exp]	6.92	0.7541
AT3G06670			binding (.1.2)		Potri.008G107300 [exp]	7.74	0.7696
AT5G15380		DRM1	domains rearranged methylase 1...		Potri.001G347000 [exp]	9.59	0.6962
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	10.39	0.7286	ARL1.3
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.013G036300 [exp]	10.58	0.7071
AT5G57250			Pentatricopeptide repeat (PPR)...		Potri.018G143800 [exp]	10.72	0.7526	CYP71.3
AT5G12430		TPR16	tetratricopeptide repeat 16, H...		Potri.009G050200 [exp]	12.12	0.7610
AT5G44180	HD		Homeodomain-like transcription...		Potri.007G135500 [exp]	14.49	0.7350

Compare expression of checked genes

Potri.011G142000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.