Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16670 529 / 0 Protein kinase superfamily protein (.1) AT3G09010 340 / 7e-115 Protein kinase superfamily protein (.1) AT1G56120 347 / 2e-110 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56130 345 / 9e-110 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 343 / 4e-109 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 340 / 6e-108 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G07650 331 / 1e-104 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 330 / 3e-104 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53430 322 / 2e-101 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53420 320 / 7e-101 Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438400 [exp] 655 / 0 AT1G16670 529 / 0.0 Protein kinase superfamily protein (.1) Potri.011G112000 [exp] 490 / 1e-173 AT1G16670 476 / 2e-168 Protein kinase superfamily protein (.1) Potri.001G393200 [exp] 483 / 5e-170 AT1G16670 471 / 2e-165 Protein kinase superfamily protein (.1) Potri.010G221400 [exp] 391 / 4e-135 AT1G16670 379 / 9e-131 Protein kinase superfamily protein (.1) Potri.006G128500 [exp] 377 / 2e-129 AT1G16670 353 / 3e-120 Protein kinase superfamily protein (.1) Potri.004G040200 [exp] 358 / 5e-122 AT3G09010 436 / 1e-152 Protein kinase superfamily protein (.1) Potri.011G049600 [exp] 357 / 2e-121 AT3G09010 427 / 2e-149 Protein kinase superfamily protein (.1) Potri.016G114800 [exp] 343 / 3e-116 AT3G09010 486 / 3e-172 Protein kinase superfamily protein (.1) Potri.007G067900 [exp] 359 / 3e-115 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026207 [exp] 580 / 0 AT1G16670 541 / 0.0 Protein kinase superfamily protein (.1) Lus10042460 [exp] 568 / 0 AT1G16670 536 / 0.0 Protein kinase superfamily protein (.1) Lus10028149 [exp] 433 / 2e-151 AT1G16670 434 / 6e-152 Protein kinase superfamily protein (.1) Lus10042851 [exp] 423 / 8e-147 AT1G16670 429 / 3e-149 Protein kinase superfamily protein (.1) Lus10026503 [exp] 362 / 9e-124 AT1G16670 369 / 2e-126 Protein kinase superfamily protein (.1) Lus10019933 [exp] 361 / 3e-123 AT1G16670 364 / 1e-124 Protein kinase superfamily protein (.1) Lus10011193 [exp] 344 / 2e-116 AT3G09010 416 / 6e-145 Protein kinase superfamily protein (.1) Lus10004825 [exp] 344 / 3e-116 AT3G09010 496 / 5e-176 Protein kinase superfamily protein (.1) Lus10031199 [exp] 357 / 4e-114 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10018481 [exp] 340 / 6e-114 AT3G09010 414 / 7e-143 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G142100.1 pacid=42780424 polypeptide=Potri.011G142100.1.p locus=Potri.011G142100 ID=Potri.011G142100.1.v4.1 annot-version=v4.1 ATGACTTGTTTTTCTTTCTTATTTGGTCGACGGATAGATTCTCCGCAACAATTTGGTGTAGTTGAAGAAGACCTTAGCCACGTTCATAATGTTAAATGCT ATTCGTACAAGGAATTAAGAAATGCCACTGAAGATTTTAGCACTGCCAACAAAATTGGGGAGGGAGGTTTCGGTTCTGTATACAAGGGACGGCTCAAACA TGGGGAAATAGCTGCTATAAAGGTTCTTTCAGCTGAGTCGAGACAAGGGGTGCCAGAATTCTTAGCAGAGATTAAAACAATGTCAGAGATAGAGCATGAA AATTTAGTGAAGTTATATGGCTGTTGTGCAGAAGGAAATCATAGAATTTTAGTTTACAACTACCTGGAGAACAATAGCCTTGCGCAAACTCTTCTAGGTG GAGGTCACAGTCACATTAATATCCAGTTTAGTTGGAGAACACGAACTAGGATTTGCATTGGGGTTGCAAGAGGGCTTGCCTTTCTTCATGATGAAGTAAA ACCATGCATTGTCCACAGAGATATCAAAGCAAGCAATATTCTACTTGACAAGGACCTAACACCAAAAATTTCAGATTTTGGTCTGGCCAAGCTTATACCT GACCACATGACACATGTCAGTACACGTGTGGCTGGAACACTAGGTTACCTGGCACCAGAGTATGCAATAAGGGGGCAATTGACACGGAAAGCAGATCTCT ACAGTTTTGGCGTCCTCCTTGTGGAAATTGTTTGTGGCAGAAATAACACAAACACAAGATTACCTGTTGCAGAACAATACCTCTTAGAACGGGCTTGGGA TCTTTATGAGCGAAGGGAGCTGGTTGCTCTGGTGGATACGGCATTAGATGGTGACTTTGATGCTGAGGAGGCTTGTAGGTTTCTAAAAATCGGTCTACTC TGCACCCAAGATAATCCAAAGCTTCGGCCTTCCATGTCTACCGTAGTCAGAATGCTGACTGGCCAGAAGGACCTTGATGAGAGTAAGATAATGAAGCCAG GCCTAATTTCTGATTTCATGGACCTCAAAGTACGAGCACCCTTCAACACCAAAGCATCTGCTACAACATCTTTTAATGCATTTTCTGGATCAGAGATGCT GGACAGTTCGATCTTGTCATCAGAAAACTCATCAACTGCAACTCCTACAACTTTGACTGGGTTATATGGTCGGAGCATTTGA
AA sequence Show only first row Show all	>Potri.011G142100.1 pacid=42780424 polypeptide=Potri.011G142100.1.p locus=Potri.011G142100 ID=Potri.011G142100.1.v4.1 annot-version=v4.1 MTCFSFLFGRRIDSPQQFGVVEEDLSHVHNVKCYSYKELRNATEDFSTANKIGEGGFGSVYKGRLKHGEIAAIKVLSAESRQGVPEFLAEIKTMSEIEHE NLVKLYGCCAEGNHRILVYNYLENNSLAQTLLGGGHSHINIQFSWRTRTRICIGVARGLAFLHDEVKPCIVHRDIKASNILLDKDLTPKISDFGLAKLIP DHMTHVSTRVAGTLGYLAPEYAIRGQLTRKADLYSFGVLLVEIVCGRNNTNTRLPVAEQYLLERAWDLYERRELVALVDTALDGDFDAEEACRFLKIGLL CTQDNPKLRPSMSTVVRMLTGQKDLDESKIMKPGLISDFMDLKVRAPFNTKASATTSFNAFSGSEMLDSSILSSENSSTATPTTLTGLYGRSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16670			Protein kinase superfamily pro...		Potri.011G142100 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	2.23	0.9158	Pt-RGA.54
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Potri.006G148100 [exp]	2.23	0.9058	NPR1.1
AT5G20110			Dynein light chain type 1 fami...		Potri.015G067800 [exp]	3.00	0.9125
AT5G07900			Mitochondrial transcription te...		Potri.001G035000 [exp]	3.46	0.9132
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.014G014100 [exp]	4.69	0.8609
AT3G11810			unknown protein		Potri.008G091600 [exp]	5.19	0.8843
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.012G131300 [exp]	5.47	0.8750	Pt-AAT1.1
AT1G56345			Pseudouridine synthase family ...		Potri.013G009300 [exp]	5.91	0.8858
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	6.92	0.9101
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	7.74	0.9043	CHC901

Compare expression of checked genes

Potri.011G142100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.