Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-PP1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79040 141 / 3e-44 PSBR photosystem II subunit R (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G438800 [exp] 171 / 8e-56 AT1G79040 178 / 9e-59 photosystem II subunit R (.1) Potri.011G142200 [exp] 149 / 5e-47 AT1G79040 180 / 2e-59 photosystem II subunit R (.1) Potri.001G438700 [exp] 148 / 8e-47 AT1G79040 181 / 5e-60 photosystem II subunit R (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026205 [exp] 133 / 7e-41 AT1G79040 191 / 6e-64 photosystem II subunit R (.1) Lus10042461 [exp] 132 / 1e-40 AT1G79040 190 / 3e-63 photosystem II subunit R (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04725 [poplar] [flax] PsbR Photosystem II 10 kDa polypeptide PsbR
Representative CDS sequence Show only first row Show all	>Potri.011G142300.1 pacid=42780327 polypeptide=Potri.011G142300.1.p locus=Potri.011G142300 ID=Potri.011G142300.1.v4.1 annot-version=v4.1 ATGGCAACCAGCTCAGTTATGGCTTCATCAATGAGCCTGAAACCAGCTCCTTTTACAGTCAAGAAACCTTCTCTCCCAAGTCTTTCAAGGAGATCATCTT TCAAAGTTGAGGCTAGTCGTTCGAGGAAGTCCAAGACTGATCAGCCTTATGGAATCAATGGTGGCATGGATTTAAGGGGTGGGCTTGATGCTTCTGGGAG AAAGGGCAAGGGAAAGGGAGTGTACCAATTTGTTGACAAATATGGTGCTAATGTTGATGGATACAGTCCTATCTACGACCCCAAGGATTGGTCTCCAAGT GGTGAAGTTTATGTTGGAGGCACTACTGGTTTGTTGATCTGGGCTGTTACCCTAGCTGGCCTTCTTGCAGGGGGAGCACTTCTTGTTTACAATACAAGTG CCTTAGTACAGTAG
AA sequence Show only first row Show all	>Potri.011G142300.1 pacid=42780327 polypeptide=Potri.011G142300.1.p locus=Potri.011G142300 ID=Potri.011G142300.1.v4.1 annot-version=v4.1 MATSSVMASSMSLKPAPFTVKKPSLPSLSRRSSFKVEASRSRKSKTDQPYGINGGMDLRGGLDASGRKGKGKGVYQFVDKYGANVDGYSPIYDPKDWSPS GEVYVGGTTGLLIWAVTLAGLLAGGALLVYNTSALVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.011G142300 [exp]	0	1	Pt-PP1.1
AT1G79040		PSBR	photosystem II subunit R (.1)		Potri.001G438800 [exp]	3.87	0.8591	Pt-PP1.2
AT4G21500			unknown protein		Potri.004G034200 [exp]	11.48	0.8841
AT2G04790			unknown protein		Potri.014G162700 [exp]	14.96	0.8812
AT2G44670			Protein of unknown function (D...		Potri.002G140300 [exp]	18.00	0.8162
AT5G58770			Undecaprenyl pyrophosphate syn...		Potri.001G250900 [exp]	23.36	0.8292
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Potri.012G040900 [exp]	24.53	0.8536
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Potri.002G219900 [exp]	24.55	0.8758
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Potri.011G122400 [exp]	26.83	0.8155	Pt-PORA.1
AT1G73470			unknown protein		Potri.015G033200 [exp]	62.64	0.8232
AT1G21640		ATNADK2, NADK2,...	NAD kinase 2 (.1.2)		Potri.005G182600 [exp]	63.49	0.8121	Pt-NADK2.1

Compare expression of checked genes

Potri.011G142300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.