Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12940 778 / 0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19895 167 / 9e-46 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G085700 [exp] 168 / 1e-45 AT3G19895 707 / 0.0 RING/U-box superfamily protein (.1) Potri.010G171100 [exp] 162 / 1e-43 AT3G19895 701 / 0.0 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002543 [exp] 775 / 0 AT3G12940 716 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027382 [exp] 597 / 0 AT3G12940 493 / 6e-173 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10034201 [exp] 152 / 4e-40 AT3G19895 662 / 0.0 RING/U-box superfamily protein (.1) Lus10000199 [exp] 87 / 4e-19 AT3G19895 352 / 3e-119 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G143000.5 pacid=42780396 polypeptide=Potri.011G143000.5.p locus=Potri.011G143000 ID=Potri.011G143000.5.v4.1 annot-version=v4.1 ATGGCAGGCAATGGCCTGCCACCTTTGGGTCGTGTGAAGCTTAGCGATCTAGTTCCCTCTGAAGGCCTTCCTTCTGAATCTTACAAACTATCAGTAACAA CTTTGTCACAATCGCTTGTTCAATATTCTGCCGCCATCATTCAGTTTTCATCAAGTGACGGGGCTCTCTTAAGATCTGGTTTGGATTCTGCTCGCTTGTA TTTCCATCAACGATCATCATTTCCAGCTCCAGATATGATTCACACTAATGATTCTCGCGAATGGTGCAAGACATCAGGTTACTACATGGATCCTCAGCTA TGGCAGGAAACATATGATTATAGACCTGGACTCACTCCTATAGAGCCCAACAATACAATGGAAATTCCTCCAGGAGGTTTGCCTGACATCTTTTGCCTGC TTGGAAAGGCAGCTAGGGATATACTGGATGCCATCAGCTTCTATTTGAATTTGCGTAGCTCTCCATTCACTGAAATACTTGATAATGTTCCCTTGAGAAA CAGGGAAATATCATCTTCTGTGTTATCTGTTTGTTGTCATGCAAGGCCATCTTTTCAGGGCACACAACATCATAATTTAACAGCCCATGAGGACGGGCAG CTGGTTATGTATCCAGACCATGAGAACCAAGTGGATAAAAGCCTAATATCTCTTGTCAAGTCAGATAAGCCAGGTTTACACATAAGAGACCTTCATGGTC GGTGGGTTCCTGTGGATGTTGATCTTGGTCCTCAAGAAGCCATTGTATACCCTGGTCTTGCCCTCTACCAGGCAACTGCAGGCTATGTCAACCCAGCACT GCTCAGAACAGAGTTTAATAGCATGCAGGGTAGCATGTATGGACGCTGTTCTTTGGCTTTTAAACTTATGCCAAAATCCATGACCAGTCTCAATTGTTCA GAGATGAGAGCAGCTGGTCATGGTGTTGAAGCTCAATTTCAGCTACCAATACCAGTGGATGATTTCATGCAGAGATCTCATCCTACCGACCAGCTCTTTA ACAGACATAATTTCCAGAGTTTCAGTTTCCCTACAGCGCAAGATGGATCTGCGAAGCCCTTGATGAGGAGGAGGAAGAATAATTCAAGATGCAAACCTCT ACCACCTTCAAAGAGGCTAAGGCTTGAGGCCCAGAGGGTTCTGAAAGAAAGAGTTCAGGACATTGCTGATAAAAAGGGTATCAAGTTAAGATTCTGCAAC CTGAAAGAGTGTGAGAATCACATTCATGCCCTAGATAGCCCATGTGCAAACATAAGAATGGAGATTGGATGGCCTCCTGGAGTGCCATTTGTTCATCCCC ATGATTTACCAAATAAGGCAAAGATTAGTTTTCTTGAAGCTTACGAGCCTGGTGCTACTCACGATATGGAGTTGAGTTTCACAGACCCTGGACAAGGCAG TCAGCATACGTCCAGCTGTAATTGTAATTCTCCTCTTATATCTAATTAA
AA sequence Show only first row Show all	>Potri.011G143000.5 pacid=42780396 polypeptide=Potri.011G143000.5.p locus=Potri.011G143000 ID=Potri.011G143000.5.v4.1 annot-version=v4.1 MAGNGLPPLGRVKLSDLVPSEGLPSESYKLSVTTLSQSLVQYSAAIIQFSSSDGALLRSGLDSARLYFHQRSSFPAPDMIHTNDSREWCKTSGYYMDPQL WQETYDYRPGLTPIEPNNTMEIPPGGLPDIFCLLGKAARDILDAISFYLNLRSSPFTEILDNVPLRNREISSSVLSVCCHARPSFQGTQHHNLTAHEDGQ LVMYPDHENQVDKSLISLVKSDKPGLHIRDLHGRWVPVDVDLGPQEAIVYPGLALYQATAGYVNPALLRTEFNSMQGSMYGRCSLAFKLMPKSMTSLNCS EMRAAGHGVEAQFQLPIPVDDFMQRSHPTDQLFNRHNFQSFSFPTAQDGSAKPLMRRRKNNSRCKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCN LKECENHIHALDSPCANIRMEIGWPPGVPFVHPHDLPNKAKISFLEAYEPGATHDMELSFTDPGQGSQHTSSCNCNSPLISN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Potri.011G143000 [exp]	0	1
AT1G26110		DCP5	decapping 5 (.1.2)		Potri.017G111500 [exp]	3.46	0.8296
AT3G20650			mRNA capping enzyme family pro...		Potri.011G130100 [exp]	3.46	0.8075
AT4G37190			unknown protein		Potri.001G361900 [exp]	9.38	0.7701
AT1G17690		NOF1	nucleolar factor 1, unknown pr...		Potri.003G010000 [exp]	11.00	0.7837
AT3G02280			Flavodoxin family protein (.1)		Potri.004G101100 [exp]	12.48	0.7830
AT1G64050			unknown protein		Potri.001G098500 [exp]	13.74	0.7966
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	14.31	0.8019
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.003G086400 [exp]	17.49	0.8088
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G114400 [exp]	19.77	0.7691
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	21.97	0.8009

Compare expression of checked genes

Potri.011G143000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.