Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SR45.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16610 169 / 5e-48 RNPS1, SR45 arginine/serine-rich 45 (.1.2.3) AT1G79100 59 / 4e-11 arginine/serine-rich protein-related (.1) AT2G27330 60 / 5e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G73530 61 / 1e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G54580 59 / 4e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G46020 57 / 4e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 58 / 5e-10 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT5G19030 56 / 3e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G08000 55 / 6e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G13860 51 / 2e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G409800 [exp] 63 / 1e-11 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.011G130300 [exp] 61 / 4e-11 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G038200 [exp] 60 / 1e-10 AT1G73530 141 / 6e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G160300 [exp] 58 / 3e-10 AT2G27330 98 / 1e-27 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.006G208500 [exp] 58 / 4e-10 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G319900 [exp] 56 / 3e-09 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.012G090200 [exp] 56 / 2e-08 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.010G199000 [exp] 55 / 3e-08 AT3G11400 422 / 4e-150 eukaryotic translation initiation factor 3G1 (.1.2) Potri.001G126400 [exp] 56 / 5e-08 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031786 [exp] 186 / 1e-54 AT1G16610 207 / 7e-63 arginine/serine-rich 45 (.1.2.3) Lus10031212 [exp] 183 / 1e-53 AT1G16610 210 / 6e-64 arginine/serine-rich 45 (.1.2.3) Lus10027383 [exp] 128 / 1e-32 AT1G16610 156 / 7e-43 arginine/serine-rich 45 (.1.2.3) Lus10002542 [exp] 122 / 6e-31 AT1G16610 149 / 8e-41 arginine/serine-rich 45 (.1.2.3) Lus10014802 [exp] 65 / 3e-11 AT5G54580 176 / 2e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003593 [exp] 65 / 3e-11 AT5G54580 174 / 6e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015146 [exp] 54 / 7e-09 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10029426 [exp] 57 / 1e-08 AT5G27720 190 / 2e-58 SM-like protein 4, embryo defective 1644, Small nuclear ribonucleoprotein family protein (.1) Lus10031534 [exp] 54 / 1e-08 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10002063 [exp] 56 / 2e-08 AT4G27000 275 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.011G143100.1 pacid=42780258 polypeptide=Potri.011G143100.1.p locus=Potri.011G143100 ID=Potri.011G143100.1.v4.1 annot-version=v4.1 ATGGCGAAGCCAACGAGAGGCCGCCCTACATCGCGATCAGGATCCGGTTCCGGCTCCTCCTCTCGCTCCCGCTCCTACTCCGGTTCAGATTCTCGCTCTA GCTCTCGCTCTCGTTCAGTGTCCCGGTCCAGATCTCGTTCTCGGTCCTTGTCCTCCTCCTCCTCGTCTCCTTCTCGCAGCGCCAGTTCTGGAAGCCGAAG CCCTCCTCCTCGCAAAAGAAGTCCTGCTGAAGGAGCTAGGCGAGGTCGGTCTCCACCACCACAATCTAAAAAGGTTTCTCCACCTCCAAGGAAAGCTTCA CCAATTCGCGAGTCTCTTGTTCTGCACGTTGACTCTCTGACCAGGAACGTGAATGAGGGTCACCTAAGAGAAATATTTAGCAACTTCGGTGAAGTTGTAC ATGTGGAGCTGGCAATGGATCGCACTGTTAATCTTCCTAAAGGATTTGGATACGTTGAGTTTAAGACTAGAGCGGATGCTGAAAAGGCCTTGCTATACAT GGACGGGGCTCAAATTGATGGCAATGTCGTTCGGGCAAAGTTCACATTACCTCCACGACAGAAGCTTTCACCACCCCCAAAGCCAATTGCCGCAGCTCCA AAGAGAGATGCTCCCAAAACTGATAATGCCAGTGCAGATGCTGAGAAGGATGGACCCAAAAGGCAAAGAGAACCTTCTCCCCATCGGAAACCTCTGGCTT CACCTCGAAGGAGGTCGCCTGTTGCTCGAAGGGGTGGATCTCCTAGACGTCAGCTGGATTCTCCACCACGCAGACGTGCAGATTCTCCTGGTCGTCGCCG AGTGGAGTCTCCTTATCGTCGTGGTGAGACACCTCCAAGGCGGAGACCTGCATCACCAGCCAGAGGTCGTTCTCCATCGTCACCTCCAAGGAGATATAGG TCCCCTTTGAGGGCCTCACCCAGAAGGATGCGTGGTAGCCCTGTTCGTAGGCGTTCTCCTCCTCCAAGGCGGCGCACACCTCCTCGACGAGCTCGTAGTC CTCCAAGAAGGTCTCCACTCCGTAGACGTAGCCGCTCTCCAATTTGTCGACCAGCTCGTTCTCGCTCAAGGTCACTCTCACCACGAAGGGGCCGAGCTCC AGGTGCAAGGCGTGGGAGGTCTTCATCATACTCTGGATCACCTAGTCCACGCAAGGCAACTCGCAAGATATCAAGGAGTCGCAGTCCTAGAAGGCCCTTG AGAGGAAGAAGCAGCAGTAACAGTAGCAGCAGCAGTTCTCCTCCTCGTAAGCCATAG
AA sequence Show only first row Show all	>Potri.011G143100.1 pacid=42780258 polypeptide=Potri.011G143100.1.p locus=Potri.011G143100 ID=Potri.011G143100.1.v4.1 annot-version=v4.1 MAKPTRGRPTSRSGSGSGSSSRSRSYSGSDSRSSSRSRSVSRSRSRSRSLSSSSSSPSRSASSGSRSPPPRKRSPAEGARRGRSPPPQSKKVSPPPRKAS PIRESLVLHVDSLTRNVNEGHLREIFSNFGEVVHVELAMDRTVNLPKGFGYVEFKTRADAEKALLYMDGAQIDGNVVRAKFTLPPRQKLSPPPKPIAAAP KRDAPKTDNASADAEKDGPKRQREPSPHRKPLASPRRRSPVARRGGSPRRQLDSPPRRRADSPGRRRVESPYRRGETPPRRRPASPARGRSPSSPPRRYR SPLRASPRRMRGSPVRRRSPPPRRRTPPRRARSPPRRSPLRRRSRSPICRPARSRSRSLSPRRGRAPGARRGRSSSYSGSPSPRKATRKISRSRSPRRPL RGRSSSNSSSSSSPPRKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Potri.011G143100 [exp]	0	1	SR45.1
AT4G17895		UBP20	ubiquitin-specific protease 20...		Potri.003G092400 [exp]	5.29	0.7357	Pt-UBP21.1
AT2G33820		ATMBAC1	Mitochondrial substrate carrie...		Potri.011G056000 [exp]	7.74	0.6557
AT4G39300			unknown protein		Potri.004G154800 [exp]	9.38	0.7449
					Potri.019G076200 [exp]	9.48	0.7162
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	13.52	0.7436
AT2G24590		RSZ22a, At-RSZ2...	RS-containing zinc finger prot...		Potri.006G272400 [exp]	15.19	0.6853	SRZ.3
AT5G39900			Small GTP-binding protein (.1)		Potri.017G079800 [exp]	18.24	0.7172
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Potri.001G038000 [exp]	21.81	0.7119	RAD23.1
AT4G20440		SMB	small nuclear ribonucleoprotei...		Potri.001G440100 [exp]	25.09	0.7330
AT1G18800		NRP2	NAP1-related protein 2 (.1)		Potri.015G062700 [exp]	25.69	0.7148

Compare expression of checked genes

Potri.011G143100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.