Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56050 357 / 7e-123 GTP-binding protein-related (.1) AT1G30580 108 / 6e-27 GTP binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457900 [exp] 394 / 2e-137 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.001G465900 [exp] 107 / 8e-27 AT1G30580 681 / 0.0 GTP binding (.1) Potri.011G164000 [exp] 107 / 2e-26 AT1G30580 691 / 0.0 GTP binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031789 [exp] 375 / 4e-130 AT1G56050 626 / 0.0 GTP-binding protein-related (.1) Lus10031209 [exp] 365 / 3e-126 AT1G56050 630 / 0.0 GTP-binding protein-related (.1) Lus10038543 [exp] 112 / 2e-28 AT1G30580 713 / 0.0 GTP binding (.1) Lus10023261 [exp] 112 / 2e-28 AT1G30580 711 / 0.0 GTP binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF06071 [poplar] [flax] YchF-GTPase_C Protein of unknown function (DUF933)
Representative CDS sequence Show only first row Show all	>Potri.011G143700.7 pacid=42780265 polypeptide=Potri.011G143700.7.p locus=Potri.011G143700 ID=Potri.011G143700.7.v4.1 annot-version=v4.1 ATGCTACAACCATTTGATGTCCTGCTGCCTCTTTTAGTAGCTGAGCTACGTCAGTTGTCCAATGGCAAGTCAAGACTAAGATTAGTTTTGTTCTGGGCTC TTTGGAGGTTTGTCCTAGAGGTTGTTCTCTGTTTTGATGATAATGACATTGTTCATGTAAATGGCAAAGTCGATCCTAAATGGGATTTTGATGTAATCAA CTTAGAGCTTGTTTTCTCAGATTTGGATCAGGTCGAGAAAAGATTAGAGAAGCTTAAGAAAGGGAAGGCAAAGGATTCACAATCTAAACTCAAGGAAGAC GCTGAAAAGTCTGCCATGGAAAGGATTCGGCATGCACTCATGGATGGAAAACCAGCACGATCTGTTACATTAACAGATTTTGAAAAGGATGCAGTGAATC ATCTTTGCTTGCTTACTATGAAACCGGTCATATATGTGGAAAATGTTGCAGAATCTGACCTAGCTGATTCTGCAATTAATCCTAATGTCAAAGAAGTGAT GAATCTTGCATCTGAATTACAATCCGGACTAGTGACAATTTCTGCACAGGTTGAATCAGAGCTTACAGAACTGCCATTTGAAGAACGAAGTGAATTTTTG AATTCACTCGGCGTTAGTGAAAGTTGCCTCGGGAACCTCATCAGAGCAACATATAGCCTTTTGGGGTTGCGTACATACTTTACTTCTGGAGAGAAGGAAA CAAAAGCTTGGACCATACTTTCAGGAATGACTGCACCTCAAGCTGCTGGAGTTATACATTCCGACTTTGAGAAGGGTTTTATTCGAGCTGAGACATTGAG AACAGTTCAAGAAGGAGATGTAATGCTGTTTCGTTTCAACGTTTGA
AA sequence Show only first row Show all	>Potri.011G143700.7 pacid=42780265 polypeptide=Potri.011G143700.7.p locus=Potri.011G143700 ID=Potri.011G143700.7.v4.1 annot-version=v4.1 MLQPFDVLLPLLVAELRQLSNGKSRLRLVLFWALWRFVLEVVLCFDDNDIVHVNGKVDPKWDFDVINLELVFSDLDQVEKRLEKLKKGKAKDSQSKLKED AEKSAMERIRHALMDGKPARSVTLTDFEKDAVNHLCLLTMKPVIYVENVAESDLADSAINPNVKEVMNLASELQSGLVTISAQVESELTELPFEERSEFL NSLGVSESCLGNLIRATYSLLGLRTYFTSGEKETKAWTILSGMTAPQAAGVIHSDFEKGFIRAETLRTVQEGDVMLFRFNV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56050			GTP-binding protein-related (....		Potri.011G143700 [exp]	0	1
AT3G48970			Heavy metal transport/detoxifi...		Potri.015G144300 [exp]	1.73	0.8553
AT5G42655			Disease resistance-responsive ...		Potri.002G131500 [exp]	3.46	0.8057
					Potri.017G139650 [exp]	8.77	0.7774
AT4G09570		CPK4, ATCPK4	calcium-dependent protein kina...		Potri.019G083200 [exp]	16.43	0.7822
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.004G153900 [exp]	18.84	0.7894	CAP1.1
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G028200 [exp]	20.09	0.6893
AT1G48140		DPMS3	dolichol phosphate mannose syn...		Potri.002G245800 [exp]	21.54	0.7962
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.010G197200 [exp]	26.85	0.7880
					Potri.010G058400 [exp]	26.94	0.7083
AT5G49890		ATCLC-C, CLC-C	chloride channel C (.1)		Potri.003G001500 [exp]	28.16	0.7660	CLC.3

Compare expression of checked genes

Potri.011G143700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.