Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79090 734 / 0 unknown protein AT3G22270 584 / 0 Topoisomerase II-associated protein PAT1 (.1) AT4G14990 554 / 0 Topoisomerase II-associated protein PAT1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457800 [exp] 1214 / 0 AT1G79090 687 / 0.0 unknown protein Potri.006G021900 [exp] 711 / 0 AT3G22270 699 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020100 [exp] 707 / 0 AT3G22270 733 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020600 [exp] 548 / 0 AT3G22270 540 / 0.0 Topoisomerase II-associated protein PAT1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031788 [exp] 938 / 0 AT1G79090 763 / 0.0 unknown protein Lus10031210 [exp] 915 / 0 AT1G79090 766 / 0.0 unknown protein Lus10039002 [exp] 601 / 0 AT3G22270 734 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10027297 [exp] 586 / 0 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10012099 [exp] 559 / 0 AT3G22270 702 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10010445 [exp] 557 / 0 AT4G14990 721 / 0.0 Topoisomerase II-associated protein PAT1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G143900.1 pacid=42782060 polypeptide=Potri.011G143900.1.p locus=Potri.011G143900 ID=Potri.011G143900.1.v4.1 annot-version=v4.1 ATGATGATGGATGGGGGTGGCGTCGAGCAAACTCCCAAGATTGGAGATAACTCTACAGAAGACACTGTATTTGATGCATCTCAATATGCATTCTTTGGTA AAGATCTTGTTGAGGAAGTTGAGTTAGGCGGATTGGAGGATGATGAGGAGTTGCCTGCAGTTGATTTAGAAGAGGAGGAGTTTTTCTTTGATAGACAAGA GGGTGAGGTTTTAAGATCCGTATCTGATGTTGATGATCTTGCAAGTACATTTTCAATGTTGAACAAGGTTGTGAGTGGACCAAGCACTGGGATAATTGGT GATAGGGGCTCTAGAGAAAGTTCATCTGCTGCTGAATGGGCACAGGGAGAGGAATTTCCTAACTGGTTTGATCAGCAGCTACTTGATCCAGATGGCGTTC AGGATGGCAAAAGATGGTCTTCACAGCCATATTACTCTACTGCTCGCCTTGCAGAATCAAAGCCTCTGCACAGAACCTCTTCATACCCTGAGCAGCAGCA GCAGCAGCAGCAGCAGCACCAACAACCACACCACCAACACTACTCTAGTGAACCTATTCTTGTGCCAAAATCTTCCTACACTTCATATCCTATCCAAGGT GGACAATCTCCACAGGCTTCACCAAACCACAGTCATCTAAATATTCCATATCTTTCTGGTGGCCACCAGATGGCGTTATCTTCACCGAATCTCCCTCCCT TCTCTAATTCTCAGCCTCTGCTAAGCAGCTTACATCATGGATCACCACATTATGGTGGGAATTTGCCTCAATTTAGTTCTGGTCTTTCTGCTAATAGCCG GCCACCAAGCCAATGGGTCAACCATACAGGCTTATATCCCGGAGAGCATCCCAATCGCATGAACAATATGTTGCAACAACCATTATCTCATCAAAATGGG CTAATGCCTCCACAGTTGATGCCACAACTGCAGTCACAACAGCATAGGCTGCACCCCTCAATTCAGCCATCATTGGGCCATCTATCAGGGATGCAGTCTC AAGTATTTAATCCCCATATCTCTCCATCCCCACCTATGATGAACAACTTTGACACAATGCTTGCTCTTGCTGATAGGGATCAAAGACCAAAAGCTGCTCA GAAAGTTAGAGCAATTATGCGATATCCTCAGCAAGGCTTTGATGCCAATGGTCAGAAGATTGATATTGGCTGGCCACAGTTCAGATCCAAGCATATGACC ACTGATGAAATTGAAACTATTCTCAGAATGCAGCTGGCTGCAACACACAGTAATGACCCATACGTGGATGATTATTACCACCAGGCATGCCTTTCAAAAA AAACAGCTGGGGCAAAGCTCAAACATCATTTCTGTCCAACTCACTTGAGGGATCTTCCTCCCCGAGCACGTGCTAATAGTGAGCCACATGCTTTTCTCCA GGTAGATGCTCTTGGGAGAATTCCTTTCTCTTCAATTCGTAGGCCTCGCCCACTTCTAGAAGTTGAACCTCCAAATTCATCTGTTGGTGGCAATGCTGAG CAGAATTCTGTTGAGAAGCCCCTAGAACAGGAGCCAATGCTTGCAGCAAGAGTCACAATTGAAGATGGTCTCTGCCTTCTTCTTGATGTAGATGATATTG ATCGTTTTTTAGAATTCAATCAATTCCATGATGGTGGAGCCCAGTTGATGAGACACAGGAGGCAGGTCTTGTTGGAAGGGCTGGCAGCATCTATGCAATT GGTCGACCCGCTTGGCAAGAATGGGAATACAGTTGGACTTGCTCCCAAGGATGATTTTGTGTTCTTGCGATTAGTATCTCTTCCCAAGGGACGGAAGCTT CTTGCAAGGTACCTTCAGCTTCTTTTTACAGGCAGCGATCTCATGCGGATTGTTTGTATGGCCATTTTTCGTCATTTAAGGTTTTTGTTTGGAGGTCTCC CTTCTGATCTCGGAGCTGCAGAAACCACAAATAACCTTTCAAGAGTTGTATCTTTATGTGTACGTCGCATGGATCTTGGTTCACTTAGTGCTTGTCTCGC TGCAGTGGTTTGCTCCTCAGAGCATCCCCCACTTCGCCCCCTTGGAAGCTCAGCTGGAAATGGGGCTTCCCTCATTTTGATGTCTGTTTTGGAGAGAGCA GCTGAACTATCAAATGATCCTCATGATGCTACCAACTATAATGTGACAGATCAGGCACTTTGGAAGGCCTCATTTGATGAGTTTTTTGGCCTCCTTATCA AGCATTGCATAAATAAATATGATAGCATCATGCAGTCTCTATCAGATTCAGATCCAGCCGAAGCTATTAAGAGGGAACTACCTATGGAGCTCTTACGTGC AAGTGTTCCCCATACTAATGACTACCAGAAGAAGCTGTTGTATGATCTTTCTCAACGTTCCTTGGTTGGTCAGGATGGTGGTAATGGTGGCCACATCAAT TCTCAAGCAGTGCTGAGTTAA
AA sequence Show only first row Show all	>Potri.011G143900.1 pacid=42782060 polypeptide=Potri.011G143900.1.p locus=Potri.011G143900 ID=Potri.011G143900.1.v4.1 annot-version=v4.1 MMMDGGGVEQTPKIGDNSTEDTVFDASQYAFFGKDLVEEVELGGLEDDEELPAVDLEEEEFFFDRQEGEVLRSVSDVDDLASTFSMLNKVVSGPSTGIIG DRGSRESSSAAEWAQGEEFPNWFDQQLLDPDGVQDGKRWSSQPYYSTARLAESKPLHRTSSYPEQQQQQQQQHQQPHHQHYSSEPILVPKSSYTSYPIQG GQSPQASPNHSHLNIPYLSGGHQMALSSPNLPPFSNSQPLLSSLHHGSPHYGGNLPQFSSGLSANSRPPSQWVNHTGLYPGEHPNRMNNMLQQPLSHQNG LMPPQLMPQLQSQQHRLHPSIQPSLGHLSGMQSQVFNPHISPSPPMMNNFDTMLALADRDQRPKAAQKVRAIMRYPQQGFDANGQKIDIGWPQFRSKHMT TDEIETILRMQLAATHSNDPYVDDYYHQACLSKKTAGAKLKHHFCPTHLRDLPPRARANSEPHAFLQVDALGRIPFSSIRRPRPLLEVEPPNSSVGGNAE QNSVEKPLEQEPMLAARVTIEDGLCLLLDVDDIDRFLEFNQFHDGGAQLMRHRRQVLLEGLAASMQLVDPLGKNGNTVGLAPKDDFVFLRLVSLPKGRKL LARYLQLLFTGSDLMRIVCMAIFRHLRFLFGGLPSDLGAAETTNNLSRVVSLCVRRMDLGSLSACLAAVVCSSEHPPLRPLGSSAGNGASLILMSVLERA AELSNDPHDATNYNVTDQALWKASFDEFFGLLIKHCINKYDSIMQSLSDSDPAEAIKRELPMELLRASVPHTNDYQKKLLYDLSQRSLVGQDGGNGGHIN SQAVLS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79090			unknown protein		Potri.011G143900 [exp]	0	1
AT5G25520			SPOC domain / Transcription el...		Potri.006G246800 [exp]	1.41	0.9204
AT3G21650			Protein phosphatase 2A regulat...		Potri.014G157000 [exp]	3.31	0.8717
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041400 [exp]	5.47	0.8805
AT1G50620			RING/FYVE/PHD zinc finger supe...		Potri.001G358900 [exp]	5.47	0.8789
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Potri.004G199600 [exp]	6.00	0.8712	Pt-NIT2.2
AT3G58570			P-loop containing nucleoside t...		Potri.006G196000 [exp]	7.48	0.8538
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Potri.009G041600 [exp]	9.69	0.8820
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Potri.001G331400 [exp]	13.11	0.8799	CHC901
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Potri.011G116200 [exp]	18.52	0.8788
AT5G14540			Protein of unknown function (D...		Potri.012G083200 [exp]	19.74	0.8574

Compare expression of checked genes

Potri.011G143900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.