Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22240 155 / 3e-41 APUM8 pumilio 8 (.1) AT1G78160 150 / 6e-39 APUM7 pumilio 7 (.1) AT5G56510 149 / 7e-39 APUM12 pumilio 12 (.1) AT1G35730 139 / 2e-35 APUM9 pumilio 9 (.1) AT5G09610 133 / 2e-33 APUM21 pumilio 21 (.1) AT4G08840 121 / 3e-29 APUM11 pumilio 11 (.1) AT1G35750 119 / 1e-28 APUM10 pumilio 10 (.1) AT5G60110 108 / 5e-26 APUM18 pumilio 18 (.1) AT5G60180 105 / 6e-25 APUM19 pumilio 19 (.1) AT4G08560 106 / 2e-24 APUM15 pumilio 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457700 [exp] 632 / 0 AT1G22240 154 / 6e-41 pumilio 8 (.1) Potri.001G002600 [exp] 164 / 1e-43 AT5G56510 525 / 3e-179 pumilio 12 (.1) Potri.003G222300 [exp] 159 / 7e-42 AT5G56510 497 / 4e-168 pumilio 12 (.1) Potri.002G095400 [exp] 144 / 8e-37 AT1G78160 473 / 8e-158 pumilio 7 (.1) Potri.002G120900 [exp] 125 / 5e-31 AT5G56510 278 / 2e-86 pumilio 12 (.1) Potri.014G020300 [exp] 120 / 3e-29 AT5G56510 260 / 1e-79 pumilio 12 (.1) Potri.001G298000 [exp] 119 / 1e-28 AT5G56510 211 / 2e-60 pumilio 12 (.1) Potri.003G009900 [exp] 97 / 6e-21 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.006G165100 [exp] 97 / 7e-21 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036469 [exp] 154 / 7e-41 AT1G78160 441 / 5e-149 pumilio 7 (.1) Lus10041139 [exp] 154 / 3e-40 AT1G78160 437 / 4e-146 pumilio 7 (.1) Lus10018710 [exp] 137 / 8e-35 AT5G56510 281 / 3e-87 pumilio 12 (.1) Lus10024793 [exp] 137 / 9e-35 AT5G56510 283 / 1e-87 pumilio 12 (.1) Lus10016513 [exp] 93 / 1e-19 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10034808 [exp] 92 / 2e-19 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10001567 [exp] 92 / 3e-19 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 91 / 4e-19 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10000516 [exp] 89 / 5e-19 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 91 / 6e-19 AT2G29200 971 / 0.0 pumilio 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat
Representative CDS sequence Show only first row Show all	>Potri.011G144000.1 pacid=42781971 polypeptide=Potri.011G144000.1.p locus=Potri.011G144000 ID=Potri.011G144000.1.v4.1 annot-version=v4.1 ATGGAGAAATCTTCTGGTTTTTCTGATAACATTGCTCCTGAAAGTTCAGACGCAATGTCTTCTTCTGCTGCGGCAAGTTGTCCTGTTGAAAACCTGTTGC TTTCTGTTGAGAATCTTTCGTTGAAAGAAGGGAGCGCTGATACAAATAACCATCACGGTTTGTCTACAAGAAACTATCTTTTGCATGATAACGGTGGTTC TTTACCAAGAATTCGAGAAACCAGGAATAATGGGTTCTCACAGTATCATACCGGGTTTGAGAATTCAATGCTGCTCCCACCACTGCTGTTTTCAGAATCT GTCTGGGGATCTAACAGTTTGAGCAATGGAGGGAGTTTTCAGGGTTCAATATTGCAACCTCGGGCAAGAAGTCTTGTTCCGAATTTCAATTTTCTGAGTG GTTCTGCCCTTGACTTGGGGACAGGCAGGGCTGGTTCGGGCCTGGGAGGCGTTGATAATAGTATGGTGCAGAATCAAGAAGAGCTCAAGAAAGTAAGGAT TTTTCTTGGTTTGCTTCAAGGAGATAGCATTGTCAACTATTGTTCAGACCAACATGGTTCAAGAACAATTCAAGGTCTATTGAGGTTGAGGAACCCGGAG ATTACACGTGAGATATATAATAAAGTTTTGGCCTTGTCATCAAGAGGAATCGCTGTTGTTTTGGAGCTGATGCTTGATCAACATGGATGGCATGTCTTTG GTGAACTAATTGATGCATTGAACTATCAACAGTTGAAATTGATTACATATGAGATAACCAAGAACTTGGACAACTTTGTTTCATTAACTCTCGACACACA TGGTTCGAACTCGATAAGGAAGGTCATTAGACTACTCCGGAGATCGCCTTTGGTTACCTTAGTGATGAACAATCTGCGTGCTGCGTTTTTTACAATCATG ACCAATCGGATAGGTTCATATGCTGTATCAGAGTGCTTTAACCAACTGAGTGCTGAAGATAATAGGTTATTATATGAAGCAGCCATTGAATGTTGTCTTG ATTTAGCAATAGACCATGAAGGATCCCTAGCCTTAATCAGGGTCATCAACACCATCCAAGGTCTGCAAAGATATCGGCTCCTAGATATCTTGTCCACATA TGTAGCCTTCCTCTCGCAGGACCCGAAAGGGAACTATGTGGTTCAGAAGGTCATATCACTCAATAACCCTTTATTCACCCAAAAAATATGCCATCATCTC AGAGGGTATTATGGAACCATCTCACTTCAGAAAGGAGGCAGTCATATCGCCGAGAAATGCTTGGATACAGAATGGAAGAGTTGGGTAATTGAGGATTTTC TGAGCAACACCAACACACTATTGCAAGTTGCTAAAGACGAATTTGGTAACTATGTGATCCAAAAAGCATTGAAAGTCACCAAGAAATCAGGCAGTCCACT CTACCAGAAACTTTTGTTGCGCCTGCAACCACATCTTAGCATTCTGCAGTCAGGATACGGAAGGAATGTCTTCAATTTGATCACTGGAGGAAGGTCAGTT AAGAAAGTGTAA
AA sequence Show only first row Show all	>Potri.011G144000.1 pacid=42781971 polypeptide=Potri.011G144000.1.p locus=Potri.011G144000 ID=Potri.011G144000.1.v4.1 annot-version=v4.1 MEKSSGFSDNIAPESSDAMSSSAAASCPVENLLLSVENLSLKEGSADTNNHHGLSTRNYLLHDNGGSLPRIRETRNNGFSQYHTGFENSMLLPPLLFSES VWGSNSLSNGGSFQGSILQPRARSLVPNFNFLSGSALDLGTGRAGSGLGGVDNSMVQNQEELKKVRIFLGLLQGDSIVNYCSDQHGSRTIQGLLRLRNPE ITREIYNKVLALSSRGIAVVLELMLDQHGWHVFGELIDALNYQQLKLITYEITKNLDNFVSLTLDTHGSNSIRKVIRLLRRSPLVTLVMNNLRAAFFTIM TNRIGSYAVSECFNQLSAEDNRLLYEAAIECCLDLAIDHEGSLALIRVINTIQGLQRYRLLDILSTYVAFLSQDPKGNYVVQKVISLNNPLFTQKICHHL RGYYGTISLQKGGSHIAEKCLDTEWKSWVIEDFLSNTNTLLQVAKDEFGNYVIQKALKVTKKSGSPLYQKLLLRLQPHLSILQSGYGRNVFNLITGGRSV KKV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22240		APUM8	pumilio 8 (.1)		Potri.011G144000 [exp]	0	1
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.001G432960 [exp]	2.23	0.7533
AT1G53520			Chalcone-flavanone isomerase f...		Potri.001G380700 [exp]	16.24	0.7800
AT4G22080		RHS14	root hair specific 14 (.1)		Potri.011G008100 [exp]	23.79	0.7664
					Potri.014G057901 [exp]	25.03	0.7251
AT5G26250			Major facilitator superfamily ...		Potri.008G150901 [exp]	28.87	0.7650
AT4G13800			Protein of unknown function (D...		Potri.001G318700 [exp]	56.99	0.7210
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Potri.017G001700 [exp]	65.45	0.6760
AT2G25920			unknown protein		Potri.002G198400 [exp]	122.80	0.6781
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.014G081200 [exp]	175.07	0.6977
AT3G50180			Plant protein of unknown funct...		Potri.016G040000 [exp]	211.91	0.6936

Compare expression of checked genes

Potri.011G144000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.