Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79080 741 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 380 / 5e-125 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 344 / 3e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 258 / 8e-78 RPF2 rna processing factor 2 (.1) AT1G63130 251 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 250 / 6e-75 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 246 / 4e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12620 247 / 5e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 246 / 2e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 245 / 5e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457300 [exp] 1011 / 0 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 379 / 6e-125 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 320 / 5e-102 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 313 / 3e-99 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 257 / 5e-77 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G019200 [exp] 253 / 1e-76 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G015900 [exp] 251 / 2e-74 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G038400 [exp] 247 / 8e-74 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050180 [exp] 245 / 2e-73 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031792 [exp] 593 / 0 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031215 [exp] 593 / 0 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031216 [exp] 515 / 1e-178 AT1G79080 479 / 3e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031791 [exp] 432 / 5e-146 AT1G79080 406 / 5e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031793 [exp] 403 / 2e-136 AT1G79080 387 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000554 [exp] 261 / 2e-79 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014660 [exp] 255 / 3e-77 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012037 [exp] 245 / 1e-72 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 236 / 8e-70 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10027914 [exp] 236 / 2e-68 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.011G144300.4 pacid=42781440 polypeptide=Potri.011G144300.4.p locus=Potri.011G144300 ID=Potri.011G144300.4.v4.1 annot-version=v4.1 ATGGCAACTTTGGTGAATTCGGTGTCTCCTTTAACAAGCCCTTCTCCAGAGACTGCGCGAACAGCTTGTGGGTTCTTTTCTAATGTCCCAAATTTCTATT CTTTTTCACTAAACAAAGGTTTCACTAGAGTTTTGGCATCAACCCAGATTACAATTTCACCTAAAGACTCTGTTTTGACACTGCCCAATTGGAAGGTTGG TAGGAATGGCACAAGAAATAGGGAGATTAGGCTTAATGATGCGTTTTTCCATTTGGAGTTTATTGTTGGGAAGGGTCATAAACCTGATGTTGCTCAAGCA ACACAGCTATTGTACGATTTGTGCAAGTCGAATAAGATGAAGAAAGCGACGAGGGTGATGGAAATGATGATTGAGTCTGGTATTATTCCTGATGCAGCTT CTTATACTTTTTTGGTGAACAATTTGTGTAAGAGAGGAAATATTGGGCATGCAATGCAATTAGTTGAGAAAATGGAGGAAAATGGCTATCCAACCAACAC GGTTACCTATAATTCGCTTGTTAGAGGGCTTTGCATGCATGGAAACTTGAATCAAAGCTTGCAGTTACTAGATAAGCTGATGTGGAAAGGGTTGGTCCCG AATGAATTTACTTATTCTTTCTTGCTTGAAGCAGCTTACAAGGAGAGAGGTGTGAACGAAGCGATGAAGCTTTTGGATGAGATAATTGCGAAGGGTTGGC AGCCTAACTTGGTTAGTTACAATGTTTTATTAACTGGATTGTGCAAGGAAGGCAGGACGGAAGAGGCAATTCGGTTCTTCAGGGATTTGCCATCAAAGGG ATTTAATCCGAATGTTGTGAGTTATAATATTATACTCAGGAGTTTGTGCCATGAAGGAAGATGGGAGGAGGCAAACCAGCTCCTGGCTGAGATGGATTCT GAGGAGCGCTCACCTTCTCTGGTTACATACAATATACTAATTGGTTCGCTTGCCTTCCATGGCAGGATTGAACATGCATTTGAAGTTTTGGATGAAATGG TTAGGGCATCATTTAAGCCCTCTGCCACAACCTATAACCCTATAATTGCTCATCTTTGCAAAGAGGGGAAGTTGGACCTTGTGATTAAGTGTCTAGACCA AATGATTCATCACCGCTGTAATCCCAATGAGGGAACGTTTAATGCCATTGCTGTGCTTTGCAAGCAGGGAAGGGTGCCAGAGGCATTCTCCATAATTCAA AACTTGGGTAATAAGCAAAGGTCATCCACCCATGACTTTTACAAAGGTGTGATTACGAGCTTGTGTAGAAAAGGGAACACGCATCCAGCATTTCAGCTTT TATACGAGATGACAAAGTTTGGATTTGTTCCTGATCCTTATACCTATTCATCTTTGATTAGAGGGTTGTGCATTGAGGGAATGCTGGATGAGGCCTTGGA GATTTTCAGGCTATTGGAAGAAAATGACTATAGGCCTATTCTTGACAATTTCAATGCCCTTATACTTGGATTTTGTAAATCTGGTAGAACAGATTTGTCC CTGGATATTTTTGAGATGATGGTTGAGAAAGGATACACACCGAATGAAACAACTTATACCATTATAGTAGAAGGGATTGCCCATGAAGAAGAAAAAGAGC TGGCAGCAGAAGTTTTAAAAGAGTTGCTCCTCAGACAAGTCATGAGAAGAAATACAGCGGAAAGACTTGTTTTGCAATACAACCTTGAGGCTTTACCAAT ATGA
AA sequence Show only first row Show all	>Potri.011G144300.4 pacid=42781440 polypeptide=Potri.011G144300.4.p locus=Potri.011G144300 ID=Potri.011G144300.4.v4.1 annot-version=v4.1 MATLVNSVSPLTSPSPETARTACGFFSNVPNFYSFSLNKGFTRVLASTQITISPKDSVLTLPNWKVGRNGTRNREIRLNDAFFHLEFIVGKGHKPDVAQA TQLLYDLCKSNKMKKATRVMEMMIESGIIPDAASYTFLVNNLCKRGNIGHAMQLVEKMEENGYPTNTVTYNSLVRGLCMHGNLNQSLQLLDKLMWKGLVP NEFTYSFLLEAAYKERGVNEAMKLLDEIIAKGWQPNLVSYNVLLTGLCKEGRTEEAIRFFRDLPSKGFNPNVVSYNIILRSLCHEGRWEEANQLLAEMDS EERSPSLVTYNILIGSLAFHGRIEHAFEVLDEMVRASFKPSATTYNPIIAHLCKEGKLDLVIKCLDQMIHHRCNPNEGTFNAIAVLCKQGRVPEAFSIIQ NLGNKQRSSTHDFYKGVITSLCRKGNTHPAFQLLYEMTKFGFVPDPYTYSSLIRGLCIEGMLDEALEIFRLLEENDYRPILDNFNALILGFCKSGRTDLS LDIFEMMVEKGYTPNETTYTIIVEGIAHEEEKELAAEVLKELLLRQVMRRNTAERLVLQYNLEALPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.011G144300 [exp]	0	1
AT4G30825			Tetratricopeptide repeat (TPR)...		Potri.006G005100 [exp]	3.31	0.9435
AT5G55580			Mitochondrial transcription te...		Potri.001G361800 [exp]	6.48	0.9386
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Potri.015G143000 [exp]	8.54	0.8816
AT4G31850		PGR3	proton gradient regulation 3 (...		Potri.006G264800 [exp]	9.16	0.9314
AT2G22360			DNAJ heat shock family protein...		Potri.007G094900 [exp]	11.09	0.9357
AT1G06510			unknown protein		Potri.005G203100 [exp]	11.48	0.9042
AT2G17033			pentatricopeptide (PPR) repeat...		Potri.009G139300 [exp]	15.55	0.9165
AT3G42630			Pentatricopeptide repeat (PPR)...		Potri.018G146900 [exp]	17.49	0.9066
AT4G02790		EMB3129	EMBRYO DEFECTIVE 3129, GTP-bin...		Potri.005G209900 [exp]	18.97	0.9306
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.001G094500 [exp]	23.62	0.8648

Compare expression of checked genes

Potri.011G144300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.