Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G19100 114 / 4e-26 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G24970 99 / 2e-21 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36280 90 / 1e-18 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT5G13130 88 / 7e-18 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1.2) AT4G36290 87 / 2e-17 CRT1 compromised recognition of TCV 1 (.1) AT5G50780 84 / 2e-16 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) AT4G36270 49 / 1e-05 ATP binding (.1) AT3G62900 49 / 1e-05 CW-type Zinc Finger (.1) AT4G15730 45 / 0.0002 CW-type Zinc Finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G079400 [exp] 115 / 9e-27 AT1G19100 706 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G102800 [exp] 97 / 2e-20 AT5G50780 769 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.012G089000 [exp] 96 / 3e-20 AT1G19100 741 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.005G118400 [exp] 95 / 5e-20 AT4G36290 706 / 0.0 compromised recognition of TCV 1 (.1) Potri.015G100900 [exp] 93 / 2e-19 AT4G24970 773 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.003G167201 [exp] 92 / 4e-19 AT4G24970 671 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Potri.013G020200 [exp] 46 / 8e-05 AT3G62900 174 / 1e-43 CW-type Zinc Finger (.1) Potri.005G028700 [exp] 46 / 9e-05 AT3G62900 176 / 5e-44 CW-type Zinc Finger (.1) Potri.002G209409 [exp] 46 / 0.0001 AT3G62900 285 / 7e-78 CW-type Zinc Finger (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042100 [exp] 110 / 1e-24 AT1G19100 667 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10039959 [exp] 108 / 4e-24 AT1G19100 640 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10014276 [exp] 100 / 8e-22 AT4G36290 697 / 0.0 compromised recognition of TCV 1 (.1) Lus10041578 [exp] 99 / 4e-21 AT4G24970 662 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10016745 [exp] 87 / 2e-17 AT4G24970 707 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10022438 [exp] 86 / 5e-17 AT4G24970 736 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10025978 [exp] 82 / 3e-16 AT4G36280 487 / 7e-168 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10001240 [exp] 55 / 1e-07 AT1G19100 532 / 0.0 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein (.1) Lus10039526 [exp] 49 / 2e-05 AT3G54460 499 / 9e-158 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1) Lus10024159 [exp] 47 / 6e-05 AT3G54460 584 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [poplar] [flax] zf-CW CW-type Zinc Finger CL0025 [poplar] [flax] His_Kinase_A PF13589 [poplar] [flax] HATPase_c_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.011G144500.7 pacid=42780715 polypeptide=Potri.011G144500.7.p locus=Potri.011G144500 ID=Potri.011G144500.7.v4.1 annot-version=v4.1 ATGGGAGAAGCAAATTTGGCTCCAGACCCGTACGTTTTGCTTATGAAAGACCACAAACCTATATGCCGGACACAGTGCCTAAATCCTCCTGCAGAACTGC CAAAATGCTGGAGTTTAAGTGATATAGTTCCAAGAGCTAGGGTACATATCCTTGGTGATCTGCCTAGTTGCTTTTTGAGTCCTGCTCCCGAGTCTTCTCG TGACAAATTTGAATGGGGCAGATTTTTGACTTATCTTCAAAAGAAAGACTCGGTTGGAATTGCAAAAGTTAAGTCCTGTCAATTCTACATACTTCCTCCT GATAAAGACTCAAATTTTAGCCATGTCCAAGTTGTATATCGGGTGGAGAAAACATGCAGTGGGAATGATGGTCAAGAACACTGTGAAGATAATGGCTCTC CTAGTGACAGGTTTCAAGGCCCTATTGAAGATCACCATGGTGGCAATACTGCAACTGAAACTTGTCGGAGACACCAGCCTCTTGCTGCGAAACAGGTTCC ACCATCAGAGAAAAATTATGCTCAGGCACATCCAAGCTACCTGGAAACTCTTGGTCAAGTGCATTATGCATGGATTTTTGGTGCAATAGCTGAGCTTGTT GATAATTCCAGGGATGCTGAAGCAACTAGACTGGACATTTCTATTGAGGAAATATATTCAAAAAGAGCTGGCAAAGAAATTCCTATGCTGTCAGTTATAG ATGATGGTCATGGCATGATCCATCGAGAGGTAGAGAAAATGGTTCGTTTTGGGCACAAGAAACCTGAGGCCGATGATCCGGATCGCATTGGAAGATTTGG TGTTGGATTTAAGACTGGAGCAATGAGATTAGGCAGGGATGCTCTGGTTATAACTCAGACTAATGATTCCAGATCCATAGCCTTTCTTTCACAATCTTTA AATGAAGGAAAAGATAATCTTGAGATACCCATTGTAAGCTACCGCAGAAAAGGACAGTTTATGGAAGTCGACACTAGTGTCCAGTTGGAAGCTTTAGCAA AGTACAACCTGAAAGTTATTAAGGAATTTTCGCCTTTTGATAAATATTTGATCGGTGCAAAAGCAGGTTTATTCCGTGAAAACCGTACAGGGACACAAAT TTTCATATGGAACTTAGATGAATGGGGATCACAATATTGTTTGGAATGGGATCGTGGATTGACTGGTGGGAGCTCCTTTCATAAAGGTGACATTCTGATC CGTTCTAGAAGGCTCAGATCTCGTCCTGGCCAGATTAGCAAAACGGTTTTTTTAGATTACTCACTTAGGTCATATCTTGAAGTCATCTTCTTAGTTCCAC GAATAAGGATTTATCTGCAAGGTTCATTGGTTAAAAGTCGACCACTGGCGAAATATTTGAATCAGACTTCGGAAGCAACTGGTAACATCATGGGGAAACG TGTTCATTTAACTCTTGGTCGCTCTCAGTTGGAATTTGAGCAGGCAAATTGTGGAATATTTTTGTATTGGCATGGTCGATTAATTGAGGCTTATAAGAGA GTTGGTGGCATGATTCACAATGGCGATTGGGGTCGAGGCGTGATTGGTGTCATTGATGTTACTGATTTAATGAATGAAGGAAATGGCCGGGTGGGCGTGC ATAATGCCAAGCAATCTTTCCTTGATTGTGAACCGTATGCTCGACTAGAGGCGTGGCTGGGAGCGAAGGCAGATGAGTATTGGACCAATAATTTTGAAAC GCTGAAGTTGAAAAAAGGTGGTTCCCTGTACAAACCTGACCACGAATGGGTGCAGTGTGATAAGTGCAGGAAGTGGAGGATGTTGAGTTCGGGGTTTGAT GTTAAAACATTACCTGAAGAATGGTTTTGTTATATGGGTCCTTTCAATGGATCATGTGAAATCCCAGAGCAAAAGGTTGATCGTGGGGTGATCACAGTGT CTGCAAAACAAAATAGACAGGATATAAAAGATGTTGACGATGATGCTATGATCAGTTCAGATGGTATTAGCGATGAAGATTCTAATCAAACCGAGAGGGA TGGCAAGCGAGATTTAAAGAGGTTAAGGAAGGGACTGCCGAGGGCTTGTAAGAAGGGACCTTGA
AA sequence Show only first row Show all	>Potri.011G144500.7 pacid=42780715 polypeptide=Potri.011G144500.7.p locus=Potri.011G144500 ID=Potri.011G144500.7.v4.1 annot-version=v4.1 MGEANLAPDPYVLLMKDHKPICRTQCLNPPAELPKCWSLSDIVPRARVHILGDLPSCFLSPAPESSRDKFEWGRFLTYLQKKDSVGIAKVKSCQFYILPP DKDSNFSHVQVVYRVEKTCSGNDGQEHCEDNGSPSDRFQGPIEDHHGGNTATETCRRHQPLAAKQVPPSEKNYAQAHPSYLETLGQVHYAWIFGAIAELV DNSRDAEATRLDISIEEIYSKRAGKEIPMLSVIDDGHGMIHREVEKMVRFGHKKPEADDPDRIGRFGVGFKTGAMRLGRDALVITQTNDSRSIAFLSQSL NEGKDNLEIPIVSYRRKGQFMEVDTSVQLEALAKYNLKVIKEFSPFDKYLIGAKAGLFRENRTGTQIFIWNLDEWGSQYCLEWDRGLTGGSSFHKGDILI RSRRLRSRPGQISKTVFLDYSLRSYLEVIFLVPRIRIYLQGSLVKSRPLAKYLNQTSEATGNIMGKRVHLTLGRSQLEFEQANCGIFLYWHGRLIEAYKR VGGMIHNGDWGRGVIGVIDVTDLMNEGNGRVGVHNAKQSFLDCEPYARLEAWLGAKADEYWTNNFETLKLKKGGSLYKPDHEWVQCDKCRKWRMLSSGFD VKTLPEEWFCYMGPFNGSCEIPEQKVDRGVITVSAKQNRQDIKDVDDDAMISSDGISDEDSNQTERDGKRDLKRLRKGLPRACKKGP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.011G144500 [exp]	0	1
AT1G07650			Leucine-rich repeat transmembr...		Potri.018G135901 [exp]	1.00	0.8129
AT5G17680			disease resistance protein (TI...		Potri.019G002500 [exp]	4.00	0.7806
					Potri.008G166566 [exp]	8.36	0.7573
AT1G16220			Protein phosphatase 2C family ...		Potri.004G066200 [exp]	10.39	0.7722
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.001G035500 [exp]	10.95	0.7337	SFB1.2
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G087100 [exp]	12.16	0.7899
AT3G22550			Protein of unknown function (D...		Potri.010G085700 [exp]	12.40	0.7557
AT5G66560			Phototropic-responsive NPH3 fa...		Potri.007G033900 [exp]	14.42	0.7606
AT4G16070			Mono-/di-acylglycerol lipase, ...		Potri.010G005800 [exp]	14.59	0.6929
AT5G27550			P-loop containing nucleoside t...		Potri.005G031500 [exp]	19.23	0.7730

Compare expression of checked genes

Potri.011G144500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.