Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65950 1512 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457201 [exp] 775 / 0 AT5G65950 744 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041289 [exp] 1665 / 0 AT5G65950 1410 / 0.0 unknown protein Lus10037422 [exp] 1546 / 0 AT5G65950 1312 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF11817 [poplar] [flax] Foie-gras_1 Foie gras liver health family 1
Representative CDS sequence Show only first row Show all	>Potri.011G144700.1 pacid=42780511 polypeptide=Potri.011G144700.1.p locus=Potri.011G144700 ID=Potri.011G144700.1.v4.1 annot-version=v4.1 ATGGAAGAATATCCAGAAGAATTACGCACGCCACCGGTAGCACTGGTTTCACTAGTAGGCTGCACGGATCACCACTCGCTAATCTCCTCTTTTCTCAACG CTGAACAACCGCCGATAAACACTTTAGCCTTACCCGATTTCTCCAAAATCACTCTCCTCCTCTCCAAGCCGACCAAATCTGATCCAGCTAATAATGGAGG AATTTTAAAGAGAGATTGGCTACTTAAACATCGAACTCGAGTTCCGTCTGTCGTCGCTGCTCTTTTTAGCTCCGGTCATGTTTCTGGCGATCCTGCTCAA TGGCTTCAAGTTTGTACTGACATTGAAAATATCAAAAATGCGACTCGGCCGAAGAATATTAAATTGATTGTTGTTGTTGTGCAATCTTCTTCGAATGATG AGATCAGTGAGGATCGAATGATTGCGTTACGCAAGCGTGCGGAAATTGATGCGAAATATCTTGTTATTTTCAATGCTAGTGATGATTTGCTACTGAAACA ATCACTTGACAGGCTGCGAGGCACGTTTGCGGAATTAGCGAATGTGTATTATAAAGATGAAGGGCGGAAGATTAAAACTCGTGTTGAAAAGAAGAGTTTC AATTCTCATGAGTTGAATGTTCGCTATTGCTTTAAAGTTGCTGTATATGCAGAGTTCCGGAGAGATTGGGTTGAAGCTTTGAGGTTTTATGAGGATGCAT ATCAAATATTGCGGGAGATGGTTGGGACAGCAAAGAAGTTGCCATTGATTCAACGCCTGGTTCAGATAAAAACTGTTGCAGAGCAATTGCATTTCAAAAT AGCAACCCTGTTATTGCATGGTGGAAAGGTGGTAGAAGCAATTACATGGTTCCGCCAGCATAATGTTTCATACAGGAGGCTTGTAGGACCCACAGATGTT GCATTTCTTCACTGGGAATGGATGAGCAGACAATTTCTGGTATTTGCTGAATTGCTCGAGACAAGCTCAAAAACTATTCATAGCAATTCAAATACAACTG CAGGCACTGCAGACCTGGCTTTGACTGAGTGGGAATTTCTACCAGCTTATTATTATCAGTTAGCTGCACACTACTTGAAGGAGAAGAGAACTACTTTGGA ACTTTCAATTACAATGTCTGAAACTGCTGATGAAATTGATAGTAATGCTGAATCTGTAGCACCTTCTATTTATGTCGGTCAGTTTGCTCGGTTACTTGAG CAAGGGGATGCCTTAATCATGCAATCCCTTACTGATGAAGAGTACACTCATTATGCTATTGCAGAAGGAAAAAGATTTCAAGATTCCTTTGAAATTATTG CTCTTCTTAAAAAAGCTTATGAAACATTCTCTAATCTCAAAGCCCAGAGGATGGCCCACTTATGTGGGTTCCACATGGCAAAGGAATACTTTGGGGTAGG TGATTTAAGTAACGCAAAGCAATTACTTGATGCTGTTGCATCTCTATACAGACAAGAGGGTTGGGTCACTTTGTTGTGGGAAGTCTTGGGTTATTTGCGA GAGTGCTCAAGGAAATCTGGTAGAGTGAAAGAGTTCGTTGAGTATTCTCTTGAATTGGCTGCATTGCCTGTATCATCGGATTCTGGGATCCAGTCTCTCA GGTATAAAGAATGTGGTCCTGCTGGTCCTGCAAGTCTTGCGCAGAGAGAAATTATACACAAGGAGGTTTTTGAGCTTGTTAGCGGAGAAACCGGGTTACA ATCAGTTGAAGGCAATAGTGATCTCAAAGTGAATGGAGAAAATCCACTGCATCTTGAAATTGATCTCGTTAGTCCCCTTAGATTGGTACTTCTTGCTTCA GTTGCTTTTCACGAACCAGTTATTAAGCCAGGAGCATCCACCTCGATTACAGTGTCACTTCTATCACAATTACCTCTACCTGTTGACATAGATAAATTAG AAGTACAGTTTAATCAATCAGAGTGTAACTTTGTCATCACAAATTCTGAAAGCCCATCAGCTGCAGTATCCAGTGGCCAACAAGGTTGGCGAATTGAAAG TGCTCCTTCTTTGGCACTTGTTACAAACAAATGGCTGAGGTTAACGTATGACGTCAAACCAGAACAAAGTGGGAAGCTAGAGTGCATATATGTCATTGCA AAAATGAGACCCCACTTCACAATATGTTGTGGTGCTGAAAGTCCTGCTTCGATGGAGGATCTACCTCTTTGGAAGTTTGAAGACTGTGCTGAAACTTTTC CAACGAAGGATCCTGCTCTTGCATTTTCTGGTCAGAAGGCTGCCCAGGTTGAAGAACCAGAACCACAAGTGGATCTTATTTTAGGAGCTACTGGGCCAGC ATTAGTTGGGGAATGCTTCAAAATTCCTGTCACTGTGGTCTCCAAGGATCATGCCATATTCTCTGGTGAGTTGAAAATCAATCTGGTAGATGTAAAAGGA GGTGGGCTGTTTAGTCCCAGGGAAGAGGAACCATTCTCTATGGACAGCCATCATGTTGAACTTCTTGGAGTTTCTGGGCCAGAAGGAGAAGATGAATCTC TAGTGGGTCCTGACAAAATTAAGAAAATTCAGCAGTCTTTTGGTTTGGTTTCTGTTCCGGTCTTAAAAGATGGAGAATCATGGTCCTGCAAGCTAGAAAT TAAGTGGCATCGACCCAAACCGGTTATGCTCTTTGTATCATTAGGCTATTTTCCAGATAGCAATGAATCAACTTCACAAAGAATCCATGTCCACAAGAGC TTGCAAATTGAAGGAAAGACTGCTGTTGTGTTTAGCCATCAGTTTATGCTGCCATTCCGCCAGGATCCACTGTTGCTCTCAAGAATCAAGTCTGTCCCTG GATCAGATCAGTTGGCGGCACTTCCTCTTAATGAAACTAGTGTACTAGTCATTGGTGCCAAGAACAGCAGTGAGGTTCCTTTGCTATTACAGTCAATGTC TATTGAAGTGGATGATGGCGTTGAGAGGCCGTGTACCTTGCAACATAGTGGCATGGATCTTATAAGTCCTGCCCATCTAGTTCCTGGAGAAGAGTTCAAA AAGGTTTTCACTGTCATTCCTGAAGTGGAATCTGTTAGTCTTGATTTGGGGTCAGTGTCTCTAAGATGGAGGAGGAATTCTGAAAAGGAAGATCTGTCCA CTTCTGATACAAAAAAAGATTGGGTTTTGACCAAACATAAACTTCCCAACATAAAAGTAGAGTCGCCCCCATTGGTATTGAGTCTGGAATGTCCTCCTTA TGCTGTTCTTGGAGATCCCATTATGTACTTGATTAAAATTCGGAATCAAACACGGTTGCTTCAAGAGGTCAAGTTCTCACTGGCAGATGCACAGAGTTTT GTGTTATCTGGGTCTCACAGTGACACAGTTTTTGTTCTTCCAAAATCTGAGCACACCCTTAGCTACAAGCTTGTGCCATTGGCTTCAGGTTCACAACAAT TGCCTCGAGTTACAGTGACCTCAGCAAGATATTCAGCTACATTTCAACCCGCAATTGCTGCATCTACTGTCTTCGTCTTCCCCTCTAAACCTCATTTCAC GACAACTGATATGGGAGACAATAAACTGGAATCCATCTGA
AA sequence Show only first row Show all	>Potri.011G144700.1 pacid=42780511 polypeptide=Potri.011G144700.1.p locus=Potri.011G144700 ID=Potri.011G144700.1.v4.1 annot-version=v4.1 MEEYPEELRTPPVALVSLVGCTDHHSLISSFLNAEQPPINTLALPDFSKITLLLSKPTKSDPANNGGILKRDWLLKHRTRVPSVVAALFSSGHVSGDPAQ WLQVCTDIENIKNATRPKNIKLIVVVVQSSSNDEISEDRMIALRKRAEIDAKYLVIFNASDDLLLKQSLDRLRGTFAELANVYYKDEGRKIKTRVEKKSF NSHELNVRYCFKVAVYAEFRRDWVEALRFYEDAYQILREMVGTAKKLPLIQRLVQIKTVAEQLHFKIATLLLHGGKVVEAITWFRQHNVSYRRLVGPTDV AFLHWEWMSRQFLVFAELLETSSKTIHSNSNTTAGTADLALTEWEFLPAYYYQLAAHYLKEKRTTLELSITMSETADEIDSNAESVAPSIYVGQFARLLE QGDALIMQSLTDEEYTHYAIAEGKRFQDSFEIIALLKKAYETFSNLKAQRMAHLCGFHMAKEYFGVGDLSNAKQLLDAVASLYRQEGWVTLLWEVLGYLR ECSRKSGRVKEFVEYSLELAALPVSSDSGIQSLRYKECGPAGPASLAQREIIHKEVFELVSGETGLQSVEGNSDLKVNGENPLHLEIDLVSPLRLVLLAS VAFHEPVIKPGASTSITVSLLSQLPLPVDIDKLEVQFNQSECNFVITNSESPSAAVSSGQQGWRIESAPSLALVTNKWLRLTYDVKPEQSGKLECIYVIA KMRPHFTICCGAESPASMEDLPLWKFEDCAETFPTKDPALAFSGQKAAQVEEPEPQVDLILGATGPALVGECFKIPVTVVSKDHAIFSGELKINLVDVKG GGLFSPREEEPFSMDSHHVELLGVSGPEGEDESLVGPDKIKKIQQSFGLVSVPVLKDGESWSCKLEIKWHRPKPVMLFVSLGYFPDSNESTSQRIHVHKS LQIEGKTAVVFSHQFMLPFRQDPLLLSRIKSVPGSDQLAALPLNETSVLVIGAKNSSEVPLLLQSMSIEVDDGVERPCTLQHSGMDLISPAHLVPGEEFK KVFTVIPEVESVSLDLGSVSLRWRRNSEKEDLSTSDTKKDWVLTKHKLPNIKVESPPLVLSLECPPYAVLGDPIMYLIKIRNQTRLLQEVKFSLADAQSF VLSGSHSDTVFVLPKSEHTLSYKLVPLASGSQQLPRVTVTSARYSATFQPAIAASTVFVFPSKPHFTTTDMGDNKLESI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65950			unknown protein		Potri.011G144700 [exp]	0	1
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.010G211100 [exp]	8.06	0.7790
AT1G23149		CPuORF29	conserved peptide upstream ope...		Potri.010G110850 [exp]	11.83	0.8454
AT5G53890		AtPSKR2	phytosylfokine-alpha receptor ...		Potri.001G398500 [exp]	12.76	0.7621
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075700 [exp]	24.41	0.7285
AT2G27770			Plant protein of unknown funct...		Potri.017G116200 [exp]	32.01	0.8156
AT1G04140			Transducin family protein / WD...		Potri.002G254700 [exp]	51.26	0.7298
AT1G05790			lipase class 3 family protein ...		Potri.002G231534 [exp]	57.68	0.7965
AT1G04910			O-fucosyltransferase family pr...		Potri.017G057300 [exp]	60.43	0.7933
AT4G26090		RPS2	RESISTANT TO P. SYRINGAE 2, NB...		Potri.006G273250 [exp]	62.72	0.7958
AT3G18860			transducin family protein / WD...		Potri.009G112184 [exp]	72.25	0.7467

Compare expression of checked genes

Potri.011G144700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.