Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13680 462 / 1e-163 PLC-like phosphodiesterases superfamily protein (.1) AT5G67130 431 / 3e-150 PLC-like phosphodiesterases superfamily protein (.1) AT1G49740 392 / 1e-135 PLC-like phosphodiesterases superfamily protein (.1) AT4G36945 376 / 8e-129 PLC-like phosphodiesterases superfamily protein (.1) AT3G19310 366 / 8e-125 PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G098900 [exp] 709 / 0 AT1G13680 450 / 3e-159 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G117500 [exp] 636 / 0 AT1G13680 447 / 8e-158 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G139400 [exp] 406 / 2e-140 AT4G36945 505 / 4e-179 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045700 [exp] 406 / 4e-140 AT5G67130 591 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.004G140200 [exp] 405 / 7e-140 AT1G49740 548 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.005G140100 [exp] 403 / 1e-138 AT5G67130 572 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.007G045200 [exp] 388 / 4e-133 AT4G36945 520 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Potri.009G100332 [exp] 249 / 5e-81 AT1G49740 341 / 9e-118 PLC-like phosphodiesterases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012600 [exp] 573 / 0 AT1G13680 440 / 5e-155 PLC-like phosphodiesterases superfamily protein (.1) Lus10035130 [exp] 544 / 0 AT1G13680 437 / 7e-154 PLC-like phosphodiesterases superfamily protein (.1) Lus10031973 [exp] 537 / 0 AT1G13680 435 / 1e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10000649 [exp] 523 / 0 AT1G13680 435 / 4e-153 PLC-like phosphodiesterases superfamily protein (.1) Lus10009368 [exp] 402 / 1e-138 AT5G67130 580 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019843 [exp] 384 / 1e-131 AT1G49740 524 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10014072 [exp] 383 / 7e-131 AT1G49740 522 / 0.0 PLC-like phosphodiesterases superfamily protein (.1) Lus10019339 [exp] 360 / 1e-121 AT4G36945 462 / 1e-161 PLC-like phosphodiesterases superfamily protein (.1) Lus10012665 [exp] 241 / 1e-78 AT1G49740 273 / 4e-92 PLC-like phosphodiesterases superfamily protein (.1) Lus10000092 [exp] 157 / 2e-46 AT4G36945 188 / 2e-58 PLC-like phosphodiesterases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G144900.1 pacid=42781638 polypeptide=Potri.011G144900.1.p locus=Potri.011G144900 ID=Potri.011G144900.1.v4.1 annot-version=v4.1 ATGTCCAGGTCTCTCTTTTCTCTCCTTAATTTATTCTCCTGTAACAGCTGCACATCCTTTCGTTTCCCTGGCAACATGGGTTTTTCTCAGAACTTGTTTC TGATCATCACAGCTTCAGTGGTCCTTGTTGATGTTGCTACAGCTTGCTCTAATGGACAATGCAAGATACTCGATGAATGTTCATCGAACCAAGATTGTGG AGCTGGACTCTATTGTTTCTCTTGTCCAGCAGGATTTTCAGGCTCTAGATGTGTAAGATCAACCATCACAAACCAATTCAAGCTTCTGAACAATTCCCTG CCGTTCAACAAATATGCATTTCTGACGACCCACAATGCATTTGCTATTGATGGATACCCATCCCACACCGGAATCCCTCGAATCACAGTCACCAATCAAG AAGACAGCATCACAGAGCAACTAAATAATGGAGCTCGAGCCTTGATGCTTGATACCTACGATTTTCGTGGAGATGTATGGTTATGCCATTCATTTAAAGG ACAATGCTATGACTTTACTGCATTTGGTCCAGCTATTGACACTCTGAAGGAAATTGAAGCTTTCTTATCAGCAAATCCAACAGAGATTGTTACATTAATC TTAGAAGATTATGTTCAAGCCCCAAATGGACTGACCAAGGTCTTCGCTGATGCTGGTCTAAAGAAATATTGGTTTCCTGTGTCAAAAATGCCCAAAAATG GTCAAGATTGGCCACTAGTTAGTGACATGGTTCAGAACAACCAAAGACTACTTGTTTTCACTTCAATTCAATCCAAGGAAGCAAGTGAAGGCATTGCTTA CCAATGGAATTACATGGTTGAAAATCAATATGGGGATGATGGCATGAAAGCAGGAAGCTGCCCTAATAGAAAAGAATCACCACCTCTTGACGACAAGAGT AGATCATTGGTGTTGGTAAATTACTTTAGGTCTATTTCCATGAAGAAACTCTCTTGTGAAGATAACTCAGAAAATCTCATGAACATGCTTCGTACTTGTG ATGGTGCTGCTGCCAGCAGATGGGCAAATTTTGTTGCTGTAAATTATTACAAGAGGAGTGAAGGAGGAGGATCATTTCAAGCTGTGGACTTGCTAAATGG GAAGCTATTGTGCGGGTGTGATGATATCCATGCATGTGTGCCTGGATCCACTTCAGGAGCCTGCTCTCTCTAA
AA sequence Show only first row Show all	>Potri.011G144900.1 pacid=42781638 polypeptide=Potri.011G144900.1.p locus=Potri.011G144900 ID=Potri.011G144900.1.v4.1 annot-version=v4.1 MSRSLFSLLNLFSCNSCTSFRFPGNMGFSQNLFLIITASVVLVDVATACSNGQCKILDECSSNQDCGAGLYCFSCPAGFSGSRCVRSTITNQFKLLNNSL PFNKYAFLTTHNAFAIDGYPSHTGIPRITVTNQEDSITEQLNNGARALMLDTYDFRGDVWLCHSFKGQCYDFTAFGPAIDTLKEIEAFLSANPTEIVTLI LEDYVQAPNGLTKVFADAGLKKYWFPVSKMPKNGQDWPLVSDMVQNNQRLLVFTSIQSKEASEGIAYQWNYMVENQYGDDGMKAGSCPNRKESPPLDDKS RSLVLVNYFRSISMKKLSCEDNSENLMNMLRTCDGAAASRWANFVAVNYYKRSEGGGSFQAVDLLNGKLLCGCDDIHACVPGSTSGACSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G13680			PLC-like phosphodiesterases su...		Potri.011G144900 [exp]	0	1
AT1G05675			UDP-Glycosyltransferase superf...		Potri.017G032300 [exp]	1.41	0.9800
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.010G236100 [exp]	2.44	0.9710
AT1G05680		UGT74E2	Uridine diphosphate glycosyltr...		Potri.017G032500 [exp]	3.16	0.9717	ZOG1.12
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Potri.006G267300 [exp]	3.31	0.9564
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.002G028700 [exp]	3.60	0.9547	VFCYSPRO.1
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Potri.001G343600 [exp]	4.47	0.9582
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.019G057901 [exp]	4.89	0.9625
AT3G45310			Cysteine proteinases superfami...		Potri.006G141700 [exp]	4.89	0.9552	Pt-ELSA.1
AT2G23840			HNH endonuclease (.1)		Potri.013G059500 [exp]	5.47	0.9618
AT3G52070			unknown protein		Potri.009G059100 [exp]	6.00	0.9588

Compare expression of checked genes

Potri.011G144900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.