Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HMGR3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76490 845 / 0 HMGR1, HMG1, AtHMGR1 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) AT2G17370 756 / 0 HMGR2, HMG2 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 2, 3-hydroxy-3-methylglutaryl-CoA reductase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457000 [exp] 1010 / 0 AT1G76490 833 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.002G004000 [exp] 900 / 0 AT1G76490 908 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.005G257000 [exp] 874 / 0 AT1G76490 817 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.004G208500 [exp] 859 / 0 AT1G76490 808 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Potri.009G169900 [exp] 855 / 0 AT1G76490 815 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013850 [exp] 747 / 0 AT1G76490 740 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1) Lus10026567 [exp] 743 / 0 AT1G76490 737 / 0.0 3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE 1, hydroxy methylglutaryl CoA reductase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00368 [poplar] [flax] HMG-CoA_red Hydroxymethylglutaryl-coenzyme A reductase
Representative CDS sequence Show only first row Show all	>Potri.011G145000.1 pacid=42780357 polypeptide=Potri.011G145000.1.p locus=Potri.011G145000 ID=Potri.011G145000.1.v4.1 annot-version=v4.1 ATGGACAAAGCTGCCGGCGAAACCCTGAAACAATACCATCGTCAGCGTCACCATCACAATGATCATCATAATTTACCAACTCCGACGTCTTTAAAGGCGT CGGATGCTCTGCCATTACCACTTTACCTTACGAACGGTTTGTTCTTCGGGCTGTTTTTCTCCGTAGCCTACTTCCTCCTTCACCGTTGGCGTGAAAAGAT CCGCAACTCCACTCCCCTTCATATCCTTACTTTCCCTGAAATCGCTGGGATAGTTTGTTTGTCTGCTTCGGTTGTTTATCTTCTTGGTTTCTTTGGGATT GGCATCGCTCAATCTCTTATCTCTCGAGGGTCACAGGATTCTTGGGACGTAGAGGAAGATCATATGATGGAGAAAAAAGGTGGGCTTTGTGCTGCAGAAA TATGTTCAGGTCCTGCAAAAAGTCCTGCTGCATCACTTGCTTGCACTCTTGCTCCGGTTCCGAGTGCGAGAGCCGTTAGCACAATGTTTCAAACACCATT GTTAGGCAGTGATGACGAGGAGGTTATCAAAGGAGTAGTATCTGGGGACATTCCTTCGTATTCTCTCGAATCAAAGCTTGCAGATTGCAAAAGGGCAGCT GTTATTCGTCGTGAAGCGCTTCAGAGAATGACAGGGAGGTCTTTGGAAGGACTGCCACTGGAGGGGTTTGATTATGAGTCAATATTGGGGCAGTGTTGTG AGATGCCTGTTGGGTATGTGCAGATTCCTGTGGGGGTTGCAGGGCCTTTGTTGCTTGACGGGAAGGAGTATACGGTCCCAATGGCTACTACTGAGGGGTG CTTGGTGGCCTCTACAAATAGAGGGTGCAAGGCTATTTATGCATCAGGTGGGGCTAGTTCTGTTTTGCTTAGAGATGGCATGACTAGAGCTCCTGTTGTC AGGTTTGGGACTGCTAAAAGGGCTGCTGAGTTGAAGTTCTTTACCGAGGATCCTGCAAATTTCGACACCCTTGGTGTTGTTTTCAACAGGTCAAGCAGAT TTGGAAGGCTACAAAACATTAAATGTACAATAGCAGGAAAGAATTTGTACATGAGGTTTAGTTGCAGCACAGGTGATGCTATGGGAATGAACATGGTCTC CAAAGGAGTCCAAAATGTCCTTGATTATCTCCAAACTGATTTTCCTGACATGGAGATCATTGGCATCTCTGGCAACTTCTGTTCTGATAAGAAACCAGCA GCTGTAAATTGGATTGAAGGGCGTGGAAAGTCAGTTGTATGTGAGGCAATCATGAAGGAAGAGGTGGTTCGGAAGGTATTGAAGACCAACGTAGCCACCC TGGTGGAGCTTAACATGCTCAAAAACCTTACCGGTTCAGCTATGGCTGGTGCTCTTGGTGGGTTTAATGCCCATGCCAGCAATATTGTTACTGCAGTCTA CATAGCCACAGGGCAGGATCCTGCTCAGAATGTTGAGAGCTCTCACTGCATTACCATGATGGAAGCTGTTAATGGTGGCAAGGACCTTCACATATCAGTC ACCATGCCTTCAATTGAGGTGGGCACAGTTGGAGGTGGCACCCAACTAGCATCTCAGTCAGCTTGCTTGAACCTACTTGGAGTGAAGGGTGCTAGCAAGG ACTCCCCAGGATCAAACTCAAGACTCTTGTCCACCATCATTGCTGGTTCTGTTTTGGCAGGGGAGCTGTCCCTGATGTCTGCTATTGCAGCCGGGCAGCT TATCAAGAGCCACATGAAATACAATAGATCTAGCAAAGACGTGTCAGAGATAGCACCCTCAAATTGA
AA sequence Show only first row Show all	>Potri.011G145000.1 pacid=42780357 polypeptide=Potri.011G145000.1.p locus=Potri.011G145000 ID=Potri.011G145000.1.v4.1 annot-version=v4.1 MDKAAGETLKQYHRQRHHHNDHHNLPTPTSLKASDALPLPLYLTNGLFFGLFFSVAYFLLHRWREKIRNSTPLHILTFPEIAGIVCLSASVVYLLGFFGI GIAQSLISRGSQDSWDVEEDHMMEKKGGLCAAEICSGPAKSPAASLACTLAPVPSARAVSTMFQTPLLGSDDEEVIKGVVSGDIPSYSLESKLADCKRAA VIRREALQRMTGRSLEGLPLEGFDYESILGQCCEMPVGYVQIPVGVAGPLLLDGKEYTVPMATTEGCLVASTNRGCKAIYASGGASSVLLRDGMTRAPVV RFGTAKRAAELKFFTEDPANFDTLGVVFNRSSRFGRLQNIKCTIAGKNLYMRFSCSTGDAMGMNMVSKGVQNVLDYLQTDFPDMEIIGISGNFCSDKKPA AVNWIEGRGKSVVCEAIMKEEVVRKVLKTNVATLVELNMLKNLTGSAMAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAVNGGKDLHISV TMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGSNSRLLSTIIAGSVLAGELSLMSAIAAGQLIKSHMKYNRSSKDVSEIAPSN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76490		HMGR1, HMG1, At...	3-HYDROXY-3-METHYLGLUTARYL COA...		Potri.011G145000 [exp]	0	1	Pt-HMGR3.2
AT1G34110			Leucine-rich receptor-like pro...		Potri.002G063300 [exp]	1.41	0.9674
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.018G095900 [exp]	1.73	0.9679
AT4G34419			unknown protein		Potri.009G102800 [exp]	4.47	0.9664
AT5G23190		CYP86B1	"cytochrome P450, family 86, s...		Potri.007G072100 [exp]	5.47	0.9669
AT5G49350			Glycine-rich protein family (....		Potri.008G108400 [exp]	7.74	0.9578
AT4G20390			Uncharacterised protein family...		Potri.011G154900 [exp]	8.36	0.9598
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Potri.010G176600 [exp]	10.24	0.9553
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.001G393300 [exp]	11.31	0.9539	3
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.009G043700 [exp]	11.83	0.9530	CYP86A19,Pt-CYP86.4
AT3G14460			LRR and NB-ARC domains-contain...		Potri.003G200800 [exp]	12.00	0.9436

Compare expression of checked genes

Potri.011G145000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.