Plant FIBer expression Database

Potri.011G145100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17420 568 / 0 NTR2, ATNTRA, NTRA NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
AT4G35460 544 / 0 ATNTRB, TRB1, NTR1 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 1, NADPH-dependent thioredoxin reductase B (.1)
AT2G41680 345 / 2e-115 NTRC NADPH-dependent thioredoxin reductase C (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G456800
[exp]
655 / 0 AT2G17420 582 / 0.0 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Potri.006G049100
[exp]
336 / 5e-112 AT2G41680 785 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
Potri.003G178200
[exp]
41 / 0.001 AT3G24170 848 / 0.0 glutathione-disulfide reductase (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006853
[exp]
531 / 0 AT4G33270 729 / 0.0 cell division cycle 20.1, Transducin family protein / WD-40 repeat family protein (.1)
Lus10038256
[exp]
440 / 2e-156 AT2G17420 442 / 1e-157 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Lus10025845
[exp]
439 / 6e-156 AT2G17420 437 / 7e-155 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Lus10018051
[exp]
337 / 9e-113 AT2G41680 845 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
Lus10042048
[exp]
334 / 2e-110 AT2G41680 840 / 0.0 NADPH-dependent thioredoxin reductase C (.1)
Lus10037596
[exp]
252 / 4e-84 AT2G17420 241 / 2e-80 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Lus10019550
[exp]
200 / 9e-64 AT2G17420 202 / 5e-65 NADPH-DEPENDENT THIOREDOXIN REDUCTASE 2, NADPH-dependent thioredoxin reductase A (.1)
Lus10038255
[exp]
132 / 8e-38 ND 115 / 7e-32
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence
>Potri.011G145100.1 pacid=42781021 polypeptide=Potri.011G145100.1.p locus=Potri.011G145100 ID=Potri.011G145100.1.v4.1 annot-version=v4.1
ATGAATCGTACCCCAAGCAGACTAAAATCCTTCCTCTTTAAAGCCCGCCATTTCCTTGGCCTAGCCACCACATCCGCCGCCGCGGCCGCATCCTCCTCCG
CCACCGCAACATCCTCCACCACCGCAACCTCAACCGCCATGGAAGAACTCAAGACCCGTGTCTGCATTATCGGAAGCGGACCCGCTGGACACACGGCAGC
AATCTATGCCTCACGAGCAGAGTTAAAACCAATCCTGTTTGAAGGATGGATGGCAAATGATATCGCCCCCGGAGGCCAGCTGACGACCACAACCGACGTG
GAAAACTTTCCTGGTTTTCCAGAAGGAATAATGGGGGTTGAGCTGACTGAGAAGTTTCGAGCTCAATCCGCTCGTTTTGGGACCCAAATTCTTACTGAAA
CGGTTACAAAAGTTGATTTTTCGAGAACCCCGTTTGAGGTTTTCACTGATTCTAAACGCGTTGTTGCGGATTCGGTTATTGTTGCCACTGGGGCGGCGGC
GAAGAAGCTGAATTTTGCAGGGTCGGAAAAGTTTTGGAATAAAGGGATTTCGGCTTGCGCGGTGTGTGATGGGGCTGCTCCTATTTTTAGGGAGAAGGCA
TTGGCTGTGATTGGAGGGGGAGACTCAGCAATGGAGGAAGCAAATTTCTTGACGAAGTATGGGACCAAGGTTTATATTATTCACAGGCGGGATACATTTA
GGGCTTCTAAGATAATGCAAAGCAGGGCATTGTCGAATCCGAAGATTGAGGTTATTTGGAATTCTGCAGTGGAGGAGGCTTATGGAGAGAGGGTTTTAGG
TGGGCTTAAAGTGAAGAATGTGGTTACTGGGGAGGTTTCGGATTTGAAGGTTAATGGGTTGTTTTTTGCTATTGGACACGAGCCTGCGACTAGGTTTATG
GACGGGCAGTTGGAGTTGGATTCTGACGGGTATGTTGTGACTATGCCGGGGACCACAAAGACCAGTGTTCGTGGGGTTTTTGCTGCTGGTGATGTTCAGG
ATAAGAAGTATAGACAAGCCATTACTGCTGCTGGCACTGGCTGCATGGCGGCGCTGGATGCAGAGCATTACCTGCAAGAGATTGGAGCTGAAGATGGCAA
AACTGATTGA
AA sequence
>Potri.011G145100.1 pacid=42781021 polypeptide=Potri.011G145100.1.p locus=Potri.011G145100 ID=Potri.011G145100.1.v4.1 annot-version=v4.1
MNRTPSRLKSFLFKARHFLGLATTSAAAAASSSATATSSTTATSTAMEELKTRVCIIGSGPAGHTAAIYASRAELKPILFEGWMANDIAPGGQLTTTTDV
ENFPGFPEGIMGVELTEKFRAQSARFGTQILTETVTKVDFSRTPFEVFTDSKRVVADSVIVATGAAAKKLNFAGSEKFWNKGISACAVCDGAAPIFREKA
LAVIGGGDSAMEEANFLTKYGTKVYIIHRRDTFRASKIMQSRALSNPKIEVIWNSAVEEAYGERVLGGLKVKNVVTGEVSDLKVNGLFFAIGHEPATRFM
DGQLELDSDGYVVTMPGTTKTSVRGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEIGAEDGKTD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G17420 NTR2, ATNTRA, N... NADPH-DEPENDENT THIOREDOXIN RE... Potri.011G145100
[exp]
0 1
AT2G40815 Calcium-dependent lipid-bindin... Potri.019G065500
[exp]
1.00 0.8992
AT1G52190 Major facilitator superfamily ... Potri.001G185700
[exp]
2.00 0.8819
Potri.007G146700
[exp]
3.00 0.8367
AT2G36985 DVL16, ROT4 ROTUNDIFOLIA4, DEVIL 16, DVL f... Potri.010G226250
[exp]
3.16 0.8476
AT1G67570 Protein of unknown function (D... Potri.012G094700
[exp]
3.46 0.8557
AT2G34190 Xanthine/uracil permease famil... Potri.004G058800
[exp]
8.48 0.8471
AT1G29980 Protein of unknown function, D... Potri.011G087500
[exp]
9.53 0.8440
AT1G74720 QKY QUIRKY, C2 calcium/lipid-bindi... Potri.016G113800
[exp]
10.24 0.7713
AT3G13560 O-Glycosyl hydrolases family 1... Potri.001G006500
[exp]
10.95 0.8573
AT5G39950 ATTRXH2, ATTRX2... Arabidopsis thioredoxin h2, th... Potri.017G076700
[exp]
11.22 0.8218 PtrTrxh2

Potri.011G145100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.