Plant FIBer expression Database

Potri.011G145200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G456700
[exp]
156 / 6e-50 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G145200.1 pacid=42781583 polypeptide=Potri.011G145200.1.p locus=Potri.011G145200 ID=Potri.011G145200.1.v4.1 annot-version=v4.1
ATGAGTCATATGCGCTACACCAGGGTTGGGAAGAGAAGTCATCATCGTCATGGAGCCAGCTGCACCAGAGGTTTCAGGCTAAAGTATCCCAGAAGATTCT
CAGTTCAAAGACTAAGAGCAAGGTTTTTCTACTTATTCAGGTTTTTTAGCAGATGGAGATCTTCTTATGGACGAGCAGTGCAATATTTGAAGAGAGGCGT
GAATAGAAATAGTAGCATCATCGAAAGATGTGGCAGCAACGAGAGGGGATTCATGATGGATGCAACCAGCTGCCACTACATGGGAAAGGTTGATGATCAG
TACAGGTTCAGATCATTTGGGAGATCAAATTCTTTCTACTCTGAAGCCATTGCGGATTGCTTAGAGTTCATCAAGAGGTCCTCCATTTCTGTGGAACAAA
AACAAGTCAGCCCGAGATAA
AA sequence
>Potri.011G145200.1 pacid=42781583 polypeptide=Potri.011G145200.1.p locus=Potri.011G145200 ID=Potri.011G145200.1.v4.1 annot-version=v4.1
MSHMRYTRVGKRSHHRHGASCTRGFRLKYPRRFSVQRLRARFFYLFRFFSRWRSSYGRAVQYLKRGVNRNSSIIERCGSNERGFMMDATSCHYMGKVDDQ
YRFRSFGRSNSFYSEAIADCLEFIKRSSISVEQKQVSPR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G145200
[exp]
0 1
AT1G07090 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, ... Potri.009G076100
[exp]
12.44 0.8122
AT3G62150 ABCB21, PGP21 ATP-binding cassette B21, P-gl... Potri.014G113500
[exp]
16.73 0.7846
AT1G29280 WRKY ATWRKY65, WRKY6... WRKY DNA-binding protein 65 (.... Potri.004G060900
[exp]
20.42 0.8080
AT4G31550 WRKY ATWRKY11, WRKY1... WRKY DNA-binding protein 11 (.... Potri.018G008500
[exp]
22.40 0.8106 Pt-WRKY11.1
AT2G26560 PLP2, PLAIIA, P... PATATIN-LIKE PROTEIN 2, phosph... Potri.014G034000
[exp]
36.46 0.7983
AT1G49050 Eukaryotic aspartyl protease f... Potri.015G053300
[exp]
50.73 0.7662
AT5G65200 ATPUB38 ARABIDOPSIS THALIANA PLANT U-B... Potri.012G076400
[exp]
56.48 0.7715
AT5G36970 NHL25 NDR1/HIN1-like 25 (.1) Potri.012G145500
[exp]
65.87 0.7724 NHL25.1
AT1G34320 Protein of unknown function (D... Potri.013G115300
[exp]
85.24 0.7206
Potri.016G003033
[exp]
90.70 0.7554

Potri.011G145200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.