Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63870 579 / 0 PP7, ATPP7 serine/threonine phosphatase 7 (.1.2.3) AT1G48120 421 / 4e-135 hydrolases;protein serine/threonine phosphatases (.1) AT5G10900 294 / 3e-93 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42810 173 / 1e-48 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT2G42500 137 / 6e-37 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT3G58500 135 / 6e-36 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT3G05580 129 / 6e-34 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G29400 129 / 1e-33 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT5G43380 128 / 2e-33 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 128 / 3e-33 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G456600 [exp] 742 / 0 AT5G63870 605 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Potri.001G196600 [exp] 355 / 5e-115 AT5G10900 372 / 2e-119 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.014G141800 [exp] 179 / 4e-50 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Potri.003G217900 [exp] 136 / 2e-36 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 136 / 2e-36 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.016G062000 [exp] 133 / 3e-35 AT3G58500 622 / 0.0 protein phosphatase 2A-4 (.1) Potri.014G135800 [exp] 136 / 3e-34 AT4G03080 1441 / 0.0 BRI1 suppressor 1 (BSU1)-like 1 (.1) Potri.006G196100 [exp] 130 / 3e-34 AT3G58500 620 / 0.0 protein phosphatase 2A-4 (.1) Potri.011G092200 [exp] 129 / 4e-34 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020898 [exp] 603 / 0 AT5G63870 608 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Lus10033478 [exp] 594 / 0 AT5G63870 601 / 0.0 serine/threonine phosphatase 7 (.1.2.3) Lus10031381 [exp] 180 / 1e-51 AT2G42810 699 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) Lus10039185 [exp] 135 / 7e-36 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10013754 [exp] 134 / 8e-36 AT2G42500 601 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10025174 [exp] 133 / 3e-35 AT2G42500 619 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10016576 [exp] 129 / 3e-33 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10016053 [exp] 127 / 4e-33 AT2G42500 610 / 0.0 protein phosphatase 2A-3 (.1.2.3) Lus10008369 [exp] 128 / 1e-31 AT1G08420 1747 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2) Lus10004100 [exp] 128 / 1e-31 AT1G08420 1686 / 0.0 BRI1 suppressor 1 (BSU1)-like 2 (.1), BRI1 suppressor 1 (BSU1)-like 2 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.011G145300.1 pacid=42781774 polypeptide=Potri.011G145300.1.p locus=Potri.011G145300 ID=Potri.011G145300.1.v4.1 annot-version=v4.1 ATGTCAGATTCATTGCCATCTGGCCCTCCGTCAGATCCCGCCACCGCCACCGCCACCGCCACCAATTCACCAGACGAAGCTACGACCACCACCTCCTCCA CGACAACAACAACCTCCACCCCAGAAGGTCCAACCCCACCACCAGTTCAGATCCCTCTCTCATGGCCTGCCGATTCTTCCCTCACCCTCGACTGGATCCA AAACCTCATTTCCGCCTTTGATTGGTCTTCCAAAAACCTCTCTCCATCTGAACTTCCTTTAGTCCTCCCTGTTCCCGTCTTTGACACTCTAGTCCTCACC GCCTCGAAAATTCTTCACAAAGAGCCTAATTGTGTCAGAATCGATGAATGTAATGATAATTCAAGAGTTGTAGTTGTAGGAGATGTTCATGGGCAACTTC ATGATGTCAATTTTTTGTTGCAAGATGCTGGGTTTCCTTGTGAAGATCGTTTTTTTGTGTTTAATGGAGATTATGTTGATCGAGGAGCTTGGGGTCTTGA GACTTTCTTGCTCTTGTTAGCTTGGAAGGTATTTTTGCCTCAGAGGGTATATCTCCTCCGTGGCAATCATGAATCCAAGTATTGCACATCTGTTTATGGT TTTGAGAAAGAAGTTTTGGCGAAGTATGGCGATAAAGGTAAGCATGTTTATCGGAAGTGTTTGGGCTGCTTTGAAGGCCTTCCCTTGGCCTCTATTATAG CTGGACATGTATATACTGCTCACGGAGGACTTTTCCGCAGTGTGTCCATCACTCCATTGAAGAGATCAAAGGGAAAGAAGAATCGAAGAATAACTTTAAA TTCTGAAACCAAACCATTATGTCTTGGTTCTTTGGAGGAGTTATCCAAAGCGCGAAGATCAGTTCTTGACCCTCCATGGGAAGGTCTGAACTTAATTCCT GGAGATGTTTTATGGTCGGATCCAACAATGAAATCTGGACTGTCACCAAATACAGAGAGAGGCATTGGTTTATTATGGGGACCTGATTGTACTGAAGATT TTTTAAAGAAGTTCCAACTAAAGCTAATCATCAGATCACATGAAGGCCCTGATGCAAGGGAAAAAAGGCCGGGTCTTGGAGGAATGGATGTAGGGTACAC CATAGATCATGTTGTACCATCAGGAAAGCTGATTACTCTCTTTAGTGCTCCAGACTATCCACAATTTCAGGCAACTGAGGATAGATTCAACAATAAAGGA GCATATATTGTCCTAAAACCCCCTTATTTTGATGTTCCGGAGTTCCACACTTTCGAAGCAATTACTCCGAGACCAGTGGTGAATGCTTATTATAATTATG AAGATGTGATTGACTCTGATGAAGAATTGGACTTGGCGTCAATGGTGACTGCTACTTAG
AA sequence Show only first row Show all	>Potri.011G145300.1 pacid=42781774 polypeptide=Potri.011G145300.1.p locus=Potri.011G145300 ID=Potri.011G145300.1.v4.1 annot-version=v4.1 MSDSLPSGPPSDPATATATATNSPDEATTTTSSTTTTTSTPEGPTPPPVQIPLSWPADSSLTLDWIQNLISAFDWSSKNLSPSELPLVLPVPVFDTLVLT ASKILHKEPNCVRIDECNDNSRVVVVGDVHGQLHDVNFLLQDAGFPCEDRFFVFNGDYVDRGAWGLETFLLLLAWKVFLPQRVYLLRGNHESKYCTSVYG FEKEVLAKYGDKGKHVYRKCLGCFEGLPLASIIAGHVYTAHGGLFRSVSITPLKRSKGKKNRRITLNSETKPLCLGSLEELSKARRSVLDPPWEGLNLIP GDVLWSDPTMKSGLSPNTERGIGLLWGPDCTEDFLKKFQLKLIIRSHEGPDAREKRPGLGGMDVGYTIDHVVPSGKLITLFSAPDYPQFQATEDRFNNKG AYIVLKPPYFDVPEFHTFEAITPRPVVNAYYNYEDVIDSDEELDLASMVTAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Potri.011G145300 [exp]	0	1
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.008G166800 [exp]	11.18	0.7201	CMDH.2
AT4G27720			Major facilitator superfamily ...		Potri.012G020500 [exp]	18.65	0.7109
AT5G49810		MMT	methionine S-methyltransferase...		Potri.004G229800 [exp]	21.49	0.5906	Pt-MMT.1,MMT
AT4G18950			Integrin-linked protein kinase...		Potri.004G064400 [exp]	26.58	0.5758
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Potri.015G078000 [exp]	33.58	0.6892
AT2G01690			ARM repeat superfamily protein...		Potri.008G134600 [exp]	40.55	0.6701
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.010G249900 [exp]	41.35	0.6670
AT3G11320			Nucleotide-sugar transporter f...		Potri.008G063400 [exp]	46.64	0.6168
AT1G80510			Transmembrane amino acid trans...		Potri.003G011900 [exp]	54.22	0.5806
AT3G59480			pfkB-like carbohydrate kinase ...		Potri.007G129700 [exp]	66.70	0.6276

Compare expression of checked genes

Potri.011G145300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.