Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38180 1003 / 0 FAR1_related FRS5 FAR1-related sequence 5 (.1) AT2G27110 635 / 0 FAR1_related FRS3 FAR1-related sequence 3 (.1.2.3) AT4G38170 588 / 0 FRS9 FAR1-related sequence 9 (.1) AT4G15090 447 / 6e-145 FAR1_related FAR1 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) AT3G06250 436 / 2e-141 FAR1_related FRS7 FAR1-related sequence 7 (.1) AT5G18960 435 / 8e-141 FAR1_related FRS12 FAR1-related sequence 12 (.1) AT3G22170 427 / 3e-137 FAR1_related FHY3 far-red elongated hypocotyls 3 (.1.2) AT1G76320 398 / 2e-127 FAR1_related FRS4 FAR1-related sequence 4 (.1.2) AT4G19990 386 / 2e-122 FAR1_related FRS1 FAR1-related sequence 1 (.1.2) AT2G32250 348 / 9e-108 FAR1_related FRS2 FAR1-related sequence 2 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G209000 [exp] 1073 / 0 AT4G38180 1163 / 0.0 FAR1-related sequence 5 (.1) Potri.009G170100 [exp] 1072 / 0 AT4G38180 1145 / 0.0 FAR1-related sequence 5 (.1) Potri.005G257600 [exp] 940 / 0 AT4G38180 891 / 0.0 FAR1-related sequence 5 (.1) Potri.009G158400 [exp] 697 / 0 AT2G27110 1138 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.004G196300 [exp] 694 / 0 AT2G27110 1115 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.004G209100 [exp] 684 / 0 AT4G38170 716 / 0.0 FAR1-related sequence 9 (.1) Potri.008G011800 [exp] 646 / 0 AT2G27110 947 / 0.0 FAR1-related sequence 3 (.1.2.3) Potri.003G110300 [exp] 476 / 2e-155 AT4G15090 799 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1) Potri.006G020600 [exp] 457 / 1e-148 AT4G15090 1078 / 0.0 FAR-RED IMPAIRED RESPONSE 1, FRS (FAR1 Related Sequences) transcription factor family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031825 [exp] 313 / 3e-97 AT1G76320 656 / 0.0 FAR1-related sequence 4 (.1.2) Lus10013855 [exp] 80 / 9e-18 AT4G38170 89 / 5e-22 FAR1-related sequence 9 (.1) Lus10022979 [exp] 79 / 9e-17 AT4G38180 85 / 8e-20 FAR1-related sequence 5 (.1) Lus10026854 [exp] 61 / 9e-10 AT3G59470 121 / 1e-32 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10020226 [exp] 57 / 2e-08 AT3G59470 120 / 7e-33 Far-red impaired responsive (FAR1) family protein (.1), Far-red impaired responsive (FAR1) family protein (.2) Lus10026732 [exp] 48 / 3e-06 AT3G07500 88 / 2e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10025517 [exp] 42 / 0.0002 AT2G43280 87 / 1e-22 Far-red impaired responsive (FAR1) family protein (.1) Lus10023137 [exp] 42 / 0.0005 AT5G18960 46 / 3e-06 FAR1-related sequence 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03101 [poplar] [flax] FAR1 FAR1 DNA-binding domain CL0274 [poplar] [flax] PF04434 [poplar] [flax] SWIM SWIM zinc finger CL0219 [poplar] [flax] RNase_H PF10551 [poplar] [flax] MULE MULE transposase domain
Representative CDS sequence Show only first row Show all	>Potri.011G145800.2 pacid=42780366 polypeptide=Potri.011G145800.2.p locus=Potri.011G145800 ID=Potri.011G145800.2.v4.1 annot-version=v4.1 ATGATAATGGAGCTGGAACCACTGACTATGGGGAATGAAGTTATTGAATTTGACATGATGGGTTTGGGAGACGATACTGTGGATGATATTCAGCATCAGT CTGTTGATGTTGGTGTTGATGAAGTGGAAGAAGAGGAAGGAGGAGATGGAGAAGTTGAAGGAAACCATTTCCTGCTGAATTTTTATGACCCCCAAAGTTC CGACAATTCCATTTCTGGTCAAGTCTATATCCCTCAAGGGGACACTAATCTTGAGCCTTATGAGGGTATGGAATTTGAGTCTGAGGAGGCTGCGAAGGCT TTTTACAATTCGTATGCTCGTCGTGTAGGATTTAGTACTCGTGTCAGTATGTCTCGCAGGTCTAGACGTGATGGTGCTATCATTCAGAGGTCTTTTGTTT GTGCAAAAGAGGGTTTCCGCATTGACAAGGATAAGCCTGCACGTTCTGATGTGCGTGTCAAACGCCCTCGTGCTGAAACCCGTGTTGGTTGTAAGGCCAT GTTGGTTGTTAAAATCCAGGATTCTGGTAGATGGGTTGTTTCGGCATTTGTAAGGGAACATAACCACGAGCTTGTTCCACCTGACAAGGTGCATTGTCTC CGCTCTCATCGCCATGTATCCGGCTCTGCCAAATCATTGATTGATACCTTGCAGGGTGCTGGGATTGGTCCCAGTGGTATTATGTCTGCCCTCATCAAAG AATATGGTGGAATCAGTAATGTTGGTTTTACTGAGCGTGACTGTAGGAATTACATGAGGAGCAGTCGACAAAGAACTCTTGGTGGTGACACTCAGCACCT TTTGGACTACCTGCGAAACAAGCAGGCTGAGAATTCTGCGTTTTTCTATGCTGTGCAGGGTGATGAAGATCAGTGTATGAGCAATATCTTCTGGGCTGAT GCAAAGGCAAGGGCTAACTACACATACTTTGGTGACACTGTTACCTTTGATACAACTTACCGGTCAAATCGCTATCGATTGCCCTTTGCACCGTTCACTG GAGTTAACCATCACGGGCAGCCTGTTTTGTTCGGTTGTGCTCTCTTGGTCAATGAATCCGAGGCTTCTTTTCTTTGGCTTTTCAAAACATGGCTTATGGC AATGTCTGAACGGCCTCCTGTTTCAATCACTACTGATCATGATAGGGTAATTTGTCTAGCCGTGAACCAGGTTTTTCCGGAAACCCGTCATCGTATCTGC AAGTGGCACATCTTTAAAGAATTCCAGGAGAAGCTGTCCCATGTGCTTTCTGAGCATCCTAATTTTGAAGCAGAGCTCCATAAATGTGTTAACCTCACAG ACTCAGTTGAGGAATTTGAGTCTTGTTGGTTGTCTCTACTTAATAGATATAATCTCAGGGAGCACGAGTGGCTACAAGCAGTTTATACTGATCGACGCCA ATGGGTCCCAGCTTACTTGAGAGATACATTCTTTGCAGAAATGTCTATAACACAGCGCAGTGACAGCATCAACTCTTACTTTGATGGATACATCAATGCC TCAACTACCCTACAGTTGTTTGTTAAGCAGTATGAGAAGGCTTTGGAAAGCCGCTATGAGAAAGAAGTCAAAGCTGACTATGATTCGATAAATACTGCCC CAGTTCTGAAGACACCTTCACCTATGGAGAAGCAAGTGGCTGAGCTCTATTCCAGGAAATTGTTTTTAAAATTTCAAGAAGAGTTGGTTGAGACTTTAAC TTTCCTGGCAACCAAAGTTGTGGATGATGGGGCAATCACCACTTATAGAGTTGCTAAGTTTGGTGAGAATCATAAAGCTTATACTGTTAGCTTTAATGTT CGTGAGATGAAAGCCTCTTGTAGTTGTCTGATGTTTGAGTTCTCCGGCCTTCTTTGCAGACACATATTGACAGTTTTTAGGGTGACAAATGTTCTTACAC TGCCTTCCCATTATGTTTTGAAACGATGGACAAGGAATGCCAAGAGTGGTGTCATATTGGAGGAACACGCCAGTGATTTTCTTGGTAGTTCACGAGAATC TCTTACCTTTCGATACAGCAACCTTCGCCATGAGGCCCTTAAGTACGTTGATAATGGAATCCAAAGTTTAGAAATTTACAATGTTTCAATGGATGCTTTG CAAGAGGCAGCAAATAAAGTGGCTCTTGCAAGAAAGAATGGTGGGAAAGTTGCAATAGCAAATAGAGCTGGCAGAGAAGAGTATCCTCCTCAGGGAAGTC AAGCAAATAATAACAATCAAAATCAGCAACAGGGCTTAGAACAGCCTGCTTCTGGGGATGACCAGGACAAGAAAATCCAGAAACTGCATCGCAAACTGGA TCGTGCACGACGAAAATGTGAAGTATATAGAGCAAACTTGCTTTCAGTGCTGAAAGATATTGAGGAGCAGAAATTACAATTGTCTATTAAAGTTCAAAAT ATTAAGTTGGGAATGAAAGATTAA
AA sequence Show only first row Show all	>Potri.011G145800.2 pacid=42780366 polypeptide=Potri.011G145800.2.p locus=Potri.011G145800 ID=Potri.011G145800.2.v4.1 annot-version=v4.1 MIMELEPLTMGNEVIEFDMMGLGDDTVDDIQHQSVDVGVDEVEEEEGGDGEVEGNHFLLNFYDPQSSDNSISGQVYIPQGDTNLEPYEGMEFESEEAAKA FYNSYARRVGFSTRVSMSRRSRRDGAIIQRSFVCAKEGFRIDKDKPARSDVRVKRPRAETRVGCKAMLVVKIQDSGRWVVSAFVREHNHELVPPDKVHCL RSHRHVSGSAKSLIDTLQGAGIGPSGIMSALIKEYGGISNVGFTERDCRNYMRSSRQRTLGGDTQHLLDYLRNKQAENSAFFYAVQGDEDQCMSNIFWAD AKARANYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCALLVNESEASFLWLFKTWLMAMSERPPVSITTDHDRVICLAVNQVFPETRHRIC KWHIFKEFQEKLSHVLSEHPNFEAELHKCVNLTDSVEEFESCWLSLLNRYNLREHEWLQAVYTDRRQWVPAYLRDTFFAEMSITQRSDSINSYFDGYINA STTLQLFVKQYEKALESRYEKEVKADYDSINTAPVLKTPSPMEKQVAELYSRKLFLKFQEELVETLTFLATKVVDDGAITTYRVAKFGENHKAYTVSFNV REMKASCSCLMFEFSGLLCRHILTVFRVTNVLTLPSHYVLKRWTRNAKSGVILEEHASDFLGSSRESLTFRYSNLRHEALKYVDNGIQSLEIYNVSMDAL QEAANKVALARKNGGKVAIANRAGREEYPPQGSQANNNNQNQQQGLEQPASGDDQDKKIQKLHRKLDRARRKCEVYRANLLSVLKDIEEQKLQLSIKVQN IKLGMKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.011G145800 [exp]	0	1
AT2G41140		CRK1, ATCRK1, A...	CDPK-related kinase 1 (.1)		Potri.016G035500 [exp]	1.00	0.8713	CRK1.2
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Potri.010G119600 [exp]	2.00	0.8484
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	3.00	0.8536
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Potri.010G125600 [exp]	4.69	0.8083
AT1G77550			tubulin-tyrosine ligases;tubul...		Potri.006G141900 [exp]	6.92	0.8063
AT1G29790			S-adenosyl-L-methionine-depend...		Potri.011G079000 [exp]	8.83	0.7769
AT5G55600			agenet domain-containing prote...		Potri.006G017400 [exp]	10.72	0.8286
AT3G14470			NB-ARC domain-containing disea...		Potri.007G137101 [exp]	12.24	0.8261
AT5G56520			unknown protein		Potri.003G221500 [exp]	12.96	0.7420
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Potri.009G093500 [exp]	15.81	0.7590

Compare expression of checked genes

Potri.011G145800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.