Plant FIBer expression Database

Potri.011G145900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51520 394 / 4e-138 diacylglycerol acyltransferase family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10039135
[exp]
419 / 2e-147 AT3G51520 421 / 2e-148 diacylglycerol acyltransferase family (.1)
Lus10013796
[exp]
416 / 5e-146 AT3G51520 424 / 2e-149 diacylglycerol acyltransferase family (.1)
Lus10039136
[exp]
355 / 3e-122 AT3G51520 349 / 2e-120 diacylglycerol acyltransferase family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0228 Acyltransferase PF03982 DAGAT Diacylglycerol acyltransferase
Representative CDS sequence
>Potri.011G145900.1 pacid=42780744 polypeptide=Potri.011G145900.1.p locus=Potri.011G145900 ID=Potri.011G145900.1.v4.1 annot-version=v4.1
ATGGAGAATCATAAGCAAGAAGAACAAGAGCAGGGAGAGCTAACAACATTCAAAGCAAGAGAATTATTTTCATCAAACATAATTCTCAGCTTGATAGCAG
TAGCAATATGGCTTGGTTCAATCCATTTTGTTGTTCTTTTAGTTATTTTTTCTCTCCTTTTTCTCTCTTTCTCCAAATGTCTCCTTGTTTTCGGATTGCT
TTTGTTGCTAGTTTTCGTTCCAATTGATGATGATAACAAGTTGGGCCGTCGCCTTTGTGGGTATATATGTAGATATGCTTGCTGCTATTTTCCGGTGACT
TTACATGTTGAGGATATAAATGCCTTCCATCCTGATCGTGCTTATGTCTTTGGTTATGAGCCACATTCAGTTTGGCCCATTGGGGTCGTTGCATTAGCAG
ATCATACAGGTTTCATGCCTCTCCCAAAAGTAAAGGTCCTTGCTAGTAGCGCTGTTTTCCTCATGCCATTTTTGAGACATATATGGACATGGTGTGGTCT
TACATCTGCTACAAAGAAAAATTTTACTTCCCTTCTGTCAGCTGGTTATAGTTGCATTGTAAATCCAGGTGGAGTACAAGAGACATTTTACATGGAGCAT
GATAATGAGATCGCTTTCCTCAAGTCAAGAAGAGGGTTTATCAAGATAGCCATGGAGAACGGTGCACCCTTGGTTCCAGTTTTCTGCTTTGGTCAATCAA
AAGTGTATAAATGGTGGAAACCCAGCGGAAAGTTATTCTTGAAAATTTCTAGGGCAATTAAATTCACTCCAGTTGTCTTTGGGGGAATTTTTGGGACTCC
CTTGCCCTTCCAACGCCCGATGCATATCGTGGTTGGTAGACCTATTGAGCTTAAGCAAAATCTTCAGCCCACTGTGGAAGAGCTCGCTGAAGTGCACAGT
CAGTTTGTTGCCGCACTGGAAGATCTCTTTAAAAGGCACAGAGCACGGGTTGGGTTTGCTGATCTTGAATTGAAAGTTCTATAA
AA sequence
>Potri.011G145900.1 pacid=42780744 polypeptide=Potri.011G145900.1.p locus=Potri.011G145900 ID=Potri.011G145900.1.v4.1 annot-version=v4.1
MENHKQEEQEQGELTTFKARELFSSNIILSLIAVAIWLGSIHFVVLLVIFSLLFLSFSKCLLVFGLLLLLVFVPIDDDNKLGRRLCGYICRYACCYFPVT
LHVEDINAFHPDRAYVFGYEPHSVWPIGVVALADHTGFMPLPKVKVLASSAVFLMPFLRHIWTWCGLTSATKKNFTSLLSAGYSCIVNPGGVQETFYMEH
DNEIAFLKSRRGFIKIAMENGAPLVPVFCFGQSKVYKWWKPSGKLFLKISRAIKFTPVVFGGIFGTPLPFQRPMHIVVGRPIELKQNLQPTVEELAEVHS
QFVAALEDLFKRHRARVGFADLELKVL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G51520 diacylglycerol acyltransferase... Potri.011G145900
[exp]
0 1
AT2G35900 unknown protein Potri.016G066800
[exp]
2.82 0.7374
AT5G51260 HAD superfamily, subfamily III... Potri.004G232900
[exp]
8.30 0.7115
AT4G09830 Uncharacterised conserved prot... Potri.002G064800
[exp]
19.33 0.6788
AT5G42960 unknown protein Potri.014G181000
[exp]
19.36 0.7080
AT4G10330 glycine-rich protein (.1) Potri.019G063300
[exp]
27.87 0.6799
AT4G13640 GARP UNE16 unfertilized embryo sac 16, Ho... Potri.017G054800
[exp]
28.98 0.7040
AT1G02816 Protein of unknown function, D... Potri.002G203400
[exp]
45.90 0.6585
AT4G02080 ASAR1, ATSARA1C... secretion-associated RAS super... Potri.013G009900
[exp]
52.22 0.6172
AT4G39910 ATUBP3 ubiquitin-specific protease 3 ... Potri.007G093600
[exp]
52.30 0.6478 Pt-UBP3.1
AT1G71090 Auxin efflux carrier family pr... Potri.017G122400
[exp]
52.64 0.6407

Potri.011G145900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.