Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10550 546 / 0 Subtilase family protein (.1.2.3) AT4G10520 544 / 0 Subtilase family protein (.1) AT2G04160 539 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT3G14067 535 / 3e-180 Subtilase family protein (.1) AT4G34980 530 / 1e-178 SLP2 subtilisin-like serine protease 2 (.1) AT1G32940 530 / 2e-178 ATSBT3.5 Subtilase family protein (.1) AT3G14240 530 / 3e-178 Subtilase family protein (.1) AT1G32960 528 / 1e-177 ATSBT3.3 Subtilase family protein (.1) AT1G32950 523 / 9e-176 Subtilase family protein (.1) AT5G59810 523 / 2e-175 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455800 [exp] 1372 / 0 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.001G450600 [exp] 618 / 0 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.009G144500 [exp] 608 / 0 AT5G59810 508 / 9e-170 Subtilase family protein (.1) Potri.011G150900 [exp] 607 / 0 AT1G32960 744 / 0.0 Subtilase family protein (.1) Potri.004G161400 [exp] 597 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.011G151200 [exp] 563 / 0 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.011G050100 [exp] 561 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 559 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 559 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023048 [exp] 553 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10035478 [exp] 550 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Lus10016064 [exp] 549 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10013187 [exp] 531 / 2e-178 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10002780 [exp] 529 / 7e-178 AT5G45650 909 / 0.0 subtilase family protein (.1) Lus10037449 [exp] 521 / 8e-175 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 520 / 1e-174 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 513 / 1e-171 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 507 / 2e-169 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10002964 [exp] 506 / 3e-169 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.011G146300.1 pacid=42780642 polypeptide=Potri.011G146300.1.p locus=Potri.011G146300 ID=Potri.011G146300.1.v4.1 annot-version=v4.1 ATGGCTTCTATGAGATGGTGTTGCATTTTCTGTCTGTTTCTTGCTGTTTTTGGAGCACAAGTTGGTATTTGTTTTTCTTCTAAGGTTTATGTGGTTTATA TGGGAAGCAAAAGTGGGGATGACCCAGATGATGTTTTGAGCCAAAATCATCTTATGCTTGCTTCTGTTCATGGAGGAAGTATCGAGCAAGCACAGGCCTC TCACCTTTATAGTTATAGACATGGCTTCAGAGGTTTTGCTGCTAAGTTGACTGATGAGCAAGCTTCTCAGATTGCTCAGATGCCTGGAGTAGTCTCTGTG TTTCCCAATTTGAAAAGGAAGTTGCACACCACTCGTTCATGGGATTTCATGGGGCTACTGGGTGAAGAGACCATGGAGATACCAGGGCATTCAACCAAGA ACCAAGTCAATGTTATCATTGGTTTTATCGATACTGGAATTTGGCCTGAATCTCCAAGTTTTAGCGATGCTAATATGCCTCCGGTGCCAGCCATATGGAG GGGGGAGTGCGAACCGGGAGAAGCATTCAATGCTTCATCTTGCAACAGGAAAGTGATTGGAGCAAGATACTATATGAGTGGCTATGAAGCTGAAGAAGAT TCTGCCAGGATAGTGTCATTCCGATCTCCAAGGGACAGCTCTGGTCATGGCAGTCACACAGCCTCGACAGCTGCTGGTCGTTATGTTACAAATGTGAATT ATAAGGGGTTGGCAGCTGGAGGGGCCAGAGGTGGTGCACCAATGGCTAGAATTGCAGTATACAAGACTTGTTGGGACTCAGGTTGCTATGATGTTGACTT GCTGGCTGCCTTTGATGATGCAATCAGAGATGGGGTTCATCTCTTGTCCGTGTCCTTGGGTCCTGATGCTCCCCAGGGAGATTATTTTAAGGATGCTATC TCCATTGGGTCATTCCATGCTGCTAGTCATGGAGTATTAGTAGTTGCTTCAGTTGGAAATGCAGGGGACCGTGGTTCTGCAACCAACCTAGCCCCATGGA TGATTACGGTTGGTGCTAGTTCAATGGATAGGGATTTTGCATCTGATATTGTTTTAGGAAATGACACAAAATTCACGGGGGAAAGTCTGAGTCTCTTTGG AATGAATGCCTCTGCAAGGATCATCTCTGCCTCTGAAGCCAGTGCAGGATATTTCACACCTTATCAATCCAGTTATTGTTTGGAGAGTTCTTTAAACAGT ACCATAGCCAGAGGCAAAGTTCTTGTCTGTCGAATTGCTGAGGGTTCAAGTGAGTCTAAGCTCGCAAAGAGCAAGGTGGTGAAAGAAGCTGGAGGAGTTG GAATGGTTCTTATTGATGAGGCAGATAAAGATGTTGCCATCCCTTTTGTCATTCCTTCAGCTATTGTGGGAAAAGAGATAGGAAGGGAGATCCTATCCTA TATAAATAACACACGAAAACCAATGTCAAAAATTTCCCGTGCAAAGACAGTTTTGGGTTCTCAACCAGCACCCCGTATTGCCTCATTTTCTTCCAAAGGA CCCAATTCCCTGACCCCTGAAATTTTGAAGCCTGATATTGCAGCTCCTGGACTGAACATCCTTGCAGCCTGGTCTCCAGTAGCTGGGAGAATGCAATTTA ACATCCTTTCTGGTACTTCCATGTCATGCCCACACATAACAGGAATTGCTACCTTGGTCAAAGCAGTCCATCCATCTTGGTCTCCATCTGCTATCAAGTC TGCAATCATGACGACTGCTACCATCCTGGATAAGAACGACGAACCCATCAGAGTGGATCCTGAAGGAAGAAGGGCCAATTCATTTGATTATGGATCAGGA TTTGTCGACCCTTCAAGAGTCCTTGATCCTGGCCTCATCTATGATGCCCATCCAATAGATTATAAGGCATTTCTCTGTTCAATTGGTTATGATGAGAAAT CACTACGTCTGGTCACAAGAGATAACAGCACATGTGATCAGACATTTACAACAGCTTCCAGCCTGAATTATCCTTCCATCACTGTTCCAAATCTTAAAGA CAGCTTCTCAGTTACTCGAACTGTGACAAATGTTGGGAAACCAAGAAGTGTTTATAAAGCTGTAGTGTCTAATCCTGTGGGAATCAATGTTACTGTTGTG CCAAAGCAACTAATCTTCAACAGATATGGCCAGAAGATCAAATTCACGGTGAATTTCAAGGTGGCTGCTCCATCAAAGGGCTATGCATTTGGTTTTTTGA CATGGACGAGTGGAGATGCACGGGTCACCAGCCCCCTAGTTGTCCAGGCTGCACCATTCCCCAAGGGCTTGATGAGATAA
AA sequence Show only first row Show all	>Potri.011G146300.1 pacid=42780642 polypeptide=Potri.011G146300.1.p locus=Potri.011G146300 ID=Potri.011G146300.1.v4.1 annot-version=v4.1 MASMRWCCIFCLFLAVFGAQVGICFSSKVYVVYMGSKSGDDPDDVLSQNHLMLASVHGGSIEQAQASHLYSYRHGFRGFAAKLTDEQASQIAQMPGVVSV FPNLKRKLHTTRSWDFMGLLGEETMEIPGHSTKNQVNVIIGFIDTGIWPESPSFSDANMPPVPAIWRGECEPGEAFNASSCNRKVIGARYYMSGYEAEED SARIVSFRSPRDSSGHGSHTASTAAGRYVTNVNYKGLAAGGARGGAPMARIAVYKTCWDSGCYDVDLLAAFDDAIRDGVHLLSVSLGPDAPQGDYFKDAI SIGSFHAASHGVLVVASVGNAGDRGSATNLAPWMITVGASSMDRDFASDIVLGNDTKFTGESLSLFGMNASARIISASEASAGYFTPYQSSYCLESSLNS TIARGKVLVCRIAEGSSESKLAKSKVVKEAGGVGMVLIDEADKDVAIPFVIPSAIVGKEIGREILSYINNTRKPMSKISRAKTVLGSQPAPRIASFSSKG PNSLTPEILKPDIAAPGLNILAAWSPVAGRMQFNILSGTSMSCPHITGIATLVKAVHPSWSPSAIKSAIMTTATILDKNDEPIRVDPEGRRANSFDYGSG FVDPSRVLDPGLIYDAHPIDYKAFLCSIGYDEKSLRLVTRDNSTCDQTFTTASSLNYPSITVPNLKDSFSVTRTVTNVGKPRSVYKAVVSNPVGINVTVV PKQLIFNRYGQKIKFTVNFKVAAPSKGYAFGFLTWTSGDARVTSPLVVQAAPFPKGLMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10550			Subtilase family protein (.1.2...		Potri.011G146300 [exp]	0	1
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.012G126500 [exp]	2.23	0.8689	NAC037
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.003G113000 [exp]	3.16	0.8668
AT1G68795		CLE12	CLAVATA3/ESR-RELATED 12 (.1)		Potri.010G130400 [exp]	4.24	0.8198	CLE12.1
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.001G401300 [exp]	4.89	0.8553
AT1G23460			Pectin lyase-like superfamily ...		Potri.001G463000 [exp]	5.19	0.8571
AT1G69420			DHHC-type zinc finger family p...		Potri.010G163200 [exp]	6.92	0.7842
AT1G76140			Prolyl oligopeptidase family p...		Potri.002G014000 [exp]	7.00	0.8150
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159000 [exp]	8.36	0.8478
AT3G01860			unknown protein		Potri.008G176300 [exp]	9.38	0.7999
AT1G09610			Protein of unknown function (D...		Potri.019G076300 [exp]	9.48	0.8062

Compare expression of checked genes

Potri.011G146300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.