Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06740 410 / 9e-135 Concanavalin A-like lectin protein kinase family protein (.1) AT4G29050 361 / 2e-115 Concanavalin A-like lectin protein kinase family protein (.1) AT5G55830 360 / 4e-115 Concanavalin A-like lectin protein kinase family protein (.1) AT5G03140 353 / 4e-112 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 350 / 4e-111 Concanavalin A-like lectin protein kinase family protein (.1) AT2G37710 348 / 2e-110 RLK receptor lectin kinase (.1) AT1G70110 347 / 6e-110 Concanavalin A-like lectin protein kinase family protein (.1) AT5G10530 338 / 8e-107 Concanavalin A-like lectin protein kinase family protein (.1) AT3G55550 336 / 1e-105 Concanavalin A-like lectin protein kinase family protein (.1) AT4G04960 334 / 6e-105 Concanavalin A-like lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455500 [exp] 1191 / 0 AT5G06740 416 / 1e-136 Concanavalin A-like lectin protein kinase family protein (.1) Potri.004G209300 [exp] 643 / 0 AT5G06740 368 / 3e-118 Concanavalin A-like lectin protein kinase family protein (.1) Potri.016G045000 [exp] 444 / 6e-148 AT5G06740 702 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G193000 [exp] 437 / 3e-145 AT5G06740 688 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.007G004200 [exp] 387 / 2e-125 AT5G10530 570 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.006G088680 [exp] 377 / 1e-121 AT2G37710 787 / 0.0 receptor lectin kinase (.1) Potri.001G283208 [exp] 376 / 9e-121 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283866 [exp] 376 / 9e-121 AT5G10530 478 / 3e-160 Concanavalin A-like lectin protein kinase family protein (.1) Potri.001G283400 [exp] 375 / 2e-120 AT5G10530 494 / 6e-167 Concanavalin A-like lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009423 [exp] 861 / 0 AT5G06740 446 / 2e-147 Concanavalin A-like lectin protein kinase family protein (.1) Lus10028699 [exp] 845 / 0 AT5G06740 455 / 1e-151 Concanavalin A-like lectin protein kinase family protein (.1) Lus10021060 [exp] 401 / 1e-131 AT5G06740 667 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10004166 [exp] 389 / 2e-126 AT5G06740 682 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10003224 [exp] 383 / 1e-123 AT3G53810 781 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10016257 [exp] 377 / 2e-121 AT5G06740 638 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10035627 [exp] 372 / 8e-120 AT2G37710 755 / 0.0 receptor lectin kinase (.1) Lus10029315 [exp] 372 / 2e-119 AT3G53810 758 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10020446 [exp] 368 / 1e-117 AT5G10530 516 / 2e-175 Concanavalin A-like lectin protein kinase family protein (.1) Lus10008597 [exp] 363 / 7e-116 AT3G53810 771 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0004 [poplar] [flax] Concanavalin PF00139 [poplar] [flax] Lectin_legB Legume lectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G146500.2 pacid=42780324 polypeptide=Potri.011G146500.2.p locus=Potri.011G146500 ID=Potri.011G146500.2.v4.1 annot-version=v4.1 ATGGATCTTCAAGCAAGTTTTGTTACCATCGTTTCTTTCCTAATTCTAGCCCTATCTCAAGCTCAAAACCTGCAACCATTCCACCGAGAATACGGCCCGT TTAACCAAACCTACTATGATATATTCCAAGTAGAAAGACCTGCCATGATCAGCAACGACGCCCTTCAGATCACTCCTGATTCTAGCAATAGAAACTTCAG TCTAGCAAACCGGTCTGGTCGTGTATTGCTCAACAAGTCCTTCATCCTATGGGAAGATGATGGGGCTGGCGGCGTACGGGTGGCTTCTTTCAACAGTTCG TTTGTTATTAACATCTTTCGCGTTGACAACTCCACACCTGGAGAAGGGTTAGCATTTCTCATAGCCCCGGACCTTGCACTCCCGGAGAACAGCGACGGGC AGTATCTCGGTCTGACCAACTCTACTACAGACCGCAATCCGGAGAATGGCATAGTTGCCATTGAGCTTGATACTGTTAAGCAGGAATTTGATCCTGATGG TAACCACATGGGCCTTAACATCCACAGTGTCATTTCTCTCAAGACTGTTTCCCTTGACGACTTGGGCATCGAAATTGCTCCTGTTGGTGCCAGGAATCAC ATGGTTTGGGTTCATTATGATGGGAACAGTAAGAAAATGGAAGTGTATATGGCAGAGGAAGGAAAGGCCAAGCCTGCCACGCCGGCGCTGGCAGCAGAAC TTAACCTCAAAGACCTTGTCCGAGAGAAGTCTTACTTTGGTTTTGCTGCATCCACGGGAAGAAATTTTCAGCTCAATTGTGTCCTCAGGTGGAACCTGAC AGTAGAGATGCTGTCTGATGACTCGGTTGAGAATGGTGGCATTGATAATAAGAAGCTGATAAAGATCTGTGTAGGAATTGGGGTTGCTCTATTTTCGTTG CTGCTGATTGGGGTAGGGACTTGGCTCTACTATCTTCACAAGAAGAAGGCAGCATCGGACCCTAATCTGTTAGGTGCCCTTAAGAGTTTGCCTGGAACGC CGAGGGAGTTCCCTTTCAAGGATCTGAAGAAGGCCACCAATAATTTCGATGAGAGGCATAAGCTTGGTCAAGGTGGTTTTGGTGTGGTCTACAAAGGTCT GCTGACCAAAGAGAACATTCAAATTGCAGTAAAAAAATTCTCCAGAGACAACATCAAGGGTCAGGATGATTTCCTGTCTGAACTTACCATCATTAACCGT CTCCGCCATAAACATCTTGTCCGATTACTTGGCTGGTGCCACAAGAGTGGAATGTTGCTTCTAGTATATGACTACATGCCAAATGGGAGCTTGGACAATC ACCTATTCCATGAACTTGAGGGTAATGTCATCCTAGAGTGGAACTTGAGGTACAAGATCATATCAGGTGTAGCATCAGCGCTGCACTACCTCCACAATGA ATATGATCAAACAGTGGTGCATCGTGACCTCAAGGCCAGTAACATCATGCTGGATTCTGAGTTCAATGCTCGGTTAGGTGATTTTGGTCTGGCGCGCGCT TTGGAGAATGAGAAAACGTCCTATGCTGAGCTAGAAGGAGTGCCTGGAACCATGGGCTACATTGCACCAGAATGCTTTCACACTGGCAAGGCCACCCGCG AGTCTGATGTCTATGGTTTCGGCGCTGTAGTTCTAGAGGTAGTGTGCGGTCAGCGTCCATGGACCAAGATTGGAGGCTTCCAATTCTTGGTGGACTGGGT TTGGAGTCTACATCGTGAAGAGCGTATACTAGAGGCTGTGGATGAAAGGCTGAACAGTGACTATGTTGCTGAGGAAGCAAAGAGGCTGCTGCTGCTTGGA CTAGCATGCTCCCATCCTATTGCCAGCGAAAGGCCTAAAACGCAGGCCATCTTTCAGATAATATCAGGATCAGTGCCGCCGCCGCACGTACCCCCTTTGA AACCAGCGTTCGTGTGGCCTGCTGCCGTTGGCAACATCGACGTTGATGCTAGTTCAGCTGATACTATTCCCATTACATCTGGTTGGACTCCTCAGTACAT CAGCAGGGAAAGTTTTGGTACAGGAGAATAA
AA sequence Show only first row Show all	>Potri.011G146500.2 pacid=42780324 polypeptide=Potri.011G146500.2.p locus=Potri.011G146500 ID=Potri.011G146500.2.v4.1 annot-version=v4.1 MDLQASFVTIVSFLILALSQAQNLQPFHREYGPFNQTYYDIFQVERPAMISNDALQITPDSSNRNFSLANRSGRVLLNKSFILWEDDGAGGVRVASFNSS FVINIFRVDNSTPGEGLAFLIAPDLALPENSDGQYLGLTNSTTDRNPENGIVAIELDTVKQEFDPDGNHMGLNIHSVISLKTVSLDDLGIEIAPVGARNH MVWVHYDGNSKKMEVYMAEEGKAKPATPALAAELNLKDLVREKSYFGFAASTGRNFQLNCVLRWNLTVEMLSDDSVENGGIDNKKLIKICVGIGVALFSL LLIGVGTWLYYLHKKKAASDPNLLGALKSLPGTPREFPFKDLKKATNNFDERHKLGQGGFGVVYKGLLTKENIQIAVKKFSRDNIKGQDDFLSELTIINR LRHKHLVRLLGWCHKSGMLLLVYDYMPNGSLDNHLFHELEGNVILEWNLRYKIISGVASALHYLHNEYDQTVVHRDLKASNIMLDSEFNARLGDFGLARA LENEKTSYAELEGVPGTMGYIAPECFHTGKATRESDVYGFGAVVLEVVCGQRPWTKIGGFQFLVDWVWSLHREERILEAVDERLNSDYVAEEAKRLLLLG LACSHPIASERPKTQAIFQIISGSVPPPHVPPLKPAFVWPAAVGNIDVDASSADTIPITSGWTPQYISRESFGTGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G06740			Concanavalin A-like lectin pro...		Potri.011G146500 [exp]	0	1
AT4G31980			unknown protein		Potri.003G207802 [exp]	1.00	0.9142
AT3G63380			ATPase E1-E2 type family prote...		Potri.002G047500 [exp]	2.00	0.8743
AT3G61930			unknown protein		Potri.002G179000 [exp]	2.82	0.8995
AT3G18670			Ankyrin repeat family protein ...		Potri.015G119800 [exp]	5.19	0.8873
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.008G078900 [exp]	6.92	0.8566
AT1G27170			transmembrane receptors;ATP bi...		Potri.005G004100 [exp]	7.07	0.8733
AT4G31980			unknown protein		Potri.003G209000 [exp]	8.36	0.8643
AT5G16560	GARP	KAN1, KAN	KANADI 1, KANADI, Homeodomain-...		Potri.017G137600 [exp]	9.79	0.8630
AT5G17680			disease resistance protein (TI...		Potri.019G069600 [exp]	11.83	0.8337
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120000 [exp]	12.96	0.8704

Compare expression of checked genes

Potri.011G146500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.