Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARRO.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14130 367 / 5e-128 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G14120 319 / 4e-109 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 120 / 2e-31 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G21200 115 / 9e-30 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 112 / 1e-28 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT1G52800 111 / 2e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G03070 111 / 2e-28 AOP1.1, AOP1 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G80330 111 / 3e-28 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT1G52820 109 / 7e-28 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G24530 110 / 8e-28 DMR6 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455400 [exp] 548 / 0 AT1G14130 376 / 1e-131 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.008G145300 [exp] 130 / 2e-35 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.009G025900 [exp] 125 / 3e-33 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.018G033400 [exp] 122 / 2e-32 AT1G52820 269 / 4e-89 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G176200 [exp] 122 / 2e-32 AT1G52820 496 / 8e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G201000 [exp] 122 / 6e-32 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.016G117100 [exp] 122 / 6e-32 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G096800 [exp] 121 / 6e-32 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.006G101100 [exp] 118 / 1e-30 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031054 [exp] 368 / 1e-128 AT1G14130 352 / 3e-122 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016659 [exp] 124 / 4e-33 AT1G52820 445 / 1e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 119 / 9e-31 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10030567 [exp] 118 / 1e-30 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 117 / 2e-30 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10008097 [exp] 115 / 5e-30 AT1G52800 221 / 2e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10029081 [exp] 112 / 2e-28 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10011980 [exp] 111 / 3e-28 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10013069 [exp] 112 / 4e-28 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10015573 [exp] 110 / 5e-28 AT5G24530 510 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.011G146600.1 pacid=42780342 polypeptide=Potri.011G146600.1.p locus=Potri.011G146600 ID=Potri.011G146600.1.v4.1 annot-version=v4.1 ATGGGTAAGAGTGGTGTCCCAATAATTGATCTGCATGAGTTTCCAGGACAGTATGAGAAACTGAGGAGAGCATGTGTGGAGTGGGGCTGTTTCAGGATTG TGAATCACAATATCTCTTTGGCCCTCATGGCAGATATGAAGAGGGTTGTGAGGTCATTGCTAGACCTGCCCTTTGATGTCAAAAAGCGCAACATAGATGT CATAGCTGGGAGTGGCTACATGGCACCAAGCAAAGTCAACCCTCTTTATGAGGCTTTAGGACTTCATGATATGAGGTCTTCTCAAGCCGTGGAAACTTTC TGCTCCCAAATGGATGCCTCTCCTTACCAAAGAGAGGTTATCGAGATGTATGCTAAGGCAATTCATGGGGCAGCCATGGATATAGCACGAAAGTTGGCTG AAAGTATGGGGTTGAATGGTGATTTGTTCGAGTCATGGATTTCCCAGTTCAGGATCAACAAGTACAGCTTCACCCCCGAAACCATAGGCTCGTCTGGAGT CCAAATACATACAGATTCTGGGTTCCTGACTATCCTTCAAGATGATGAAAATGTTGGTGGACTTGAAGTGATGGACCCATCTGGTGTGTTTGCTGCAGTT GATCCTTCACCAGGCACCCTCCTGGTCAATCTTGGAGACGTTGCTACGGCATGGAGCAATGGAGGGCTTCGTAACGTGCAGCATCGAGTGCAATGCAAGG AAGCCACAATTCGGATCTCAATCGCTTCATTCCTGGTCGGTCCCAAGGACGAAGTGGAAGCTCCGCCGGAACTTGTGGACTCTGAACACCCACGTCTCTT TGTCCCTTTCAAATATGAAGATTATAGAAAGCTCAGACTTACCACAAAATTGGAGGCTGGTGAAGCCCTTGAACTTAAACGCATCCTGTCCTAA
AA sequence Show only first row Show all	>Potri.011G146600.1 pacid=42780342 polypeptide=Potri.011G146600.1.p locus=Potri.011G146600 ID=Potri.011G146600.1.v4.1 annot-version=v4.1 MGKSGVPIIDLHEFPGQYEKLRRACVEWGCFRIVNHNISLALMADMKRVVRSLLDLPFDVKKRNIDVIAGSGYMAPSKVNPLYEALGLHDMRSSQAVETF CSQMDASPYQREVIEMYAKAIHGAAMDIARKLAESMGLNGDLFESWISQFRINKYSFTPETIGSSGVQIHTDSGFLTILQDDENVGGLEVMDPSGVFAAV DPSPGTLLVNLGDVATAWSNGGLRNVQHRVQCKEATIRISIASFLVGPKDEVEAPPELVDSEHPRLFVPFKYEDYRKLRLTTKLEAGEALELKRILS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.011G146600 [exp]	0	1	ARRO.1
					Potri.009G083702 [exp]	1.00	0.8258
AT3G44370			Membrane insertion protein, Ox...		Potri.009G121800 [exp]	2.44	0.7817
AT5G52545			unknown protein		Potri.004G079400 [exp]	12.12	0.7776
AT2G45880	BZR	BAM7, BMY4	BETA-AMYLASE 4, beta-amylase 7...		Potri.001G372500 [exp]	16.49	0.7521
AT5G66380		ATFOLT1	folate transporter 1 (.1)		Potri.007G019000 [exp]	19.97	0.6521
AT5G54850			unknown protein		Potri.001G421000 [exp]	21.21	0.7625
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.017G036100 [exp]	23.32	0.7767
					Potri.018G126300 [exp]	32.17	0.7305
AT3G49000			RNA polymerase III subunit RPC...		Potri.015G144900 [exp]	34.59	0.7506
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.014G143900 [exp]	40.65	0.7163

Compare expression of checked genes

Potri.011G146600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.