Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65930 1863 / 0 PKCBP, ZWI POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) AT2G22610 303 / 1e-85 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27550 292 / 2e-84 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G27000 295 / 2e-83 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT4G27180 285 / 4e-82 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT5G54670 283 / 5e-81 KATC, ATK3 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) AT1G72250 290 / 7e-81 Di-glucose binding protein with Kinesin motor domain (.1.2) AT4G05190 276 / 2e-78 ATK5 kinesin 5 (.1) AT4G21270 276 / 3e-78 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT2G47500 270 / 3e-75 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G455300 [exp] 2328 / 0 AT5G65930 1881 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Potri.001G416300 [exp] 285 / 7e-82 AT5G54670 1090 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.002G110600 [exp] 288 / 5e-81 AT2G22610 1057 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.011G131900 [exp] 281 / 2e-80 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.005G030271 [exp] 280 / 6e-80 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.013G020700 [exp] 279 / 1e-79 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.011G140000 [exp] 285 / 4e-79 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.001G436200 [exp] 283 / 2e-78 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.014G125700 [exp] 279 / 4e-78 AT2G47500 1218 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006064 [exp] 1996 / 0 AT5G65930 1877 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Lus10009426 [exp] 1907 / 0 AT5G65930 1796 / 0.0 POTATO KINESIN-LIKE CALMODULIN-BINDING PROTEIN, kinesin-like calmodulin-binding protein (ZWICHEL) (.1), kinesin-like calmodulin-binding protein (ZWICHEL) (.2), kinesin-like calmodulin-binding protein (ZWICHEL) (.3) Lus10035954 [exp] 315 / 4e-90 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 293 / 1e-82 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 282 / 3e-78 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 281 / 4e-78 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10035838 [exp] 272 / 5e-77 AT5G54670 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10036621 [exp] 270 / 5e-76 AT5G54670 1075 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Lus10029865 [exp] 272 / 2e-75 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10018384 [exp] 266 / 5e-75 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0632 [poplar] [flax] FERM_M PF00373 [poplar] [flax] FERM_M FERM central domain CL0632 [poplar] [flax] PF00784 [poplar] [flax] MyTH4 MyTH4 domain CL0072 [poplar] [flax] Ubiquitin PF09379 [poplar] [flax] FERM_N FERM N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G146700.4 pacid=42780632 polypeptide=Potri.011G146700.4.p locus=Potri.011G146700 ID=Potri.011G146700.4.v4.1 annot-version=v4.1 ATGAAACTTGATGTGCAGTCGTTAATGGCTCAAAGTATCAGATCAAGCAGGTCTTCTTTTAGCTCCACTAATGGAAATGAAGAGACTCCTATGCACCCTT CTGCTTCTTTCTCAAATGGGGATGGATATGATAGCGATGGCTCCAATTTCGCTACCCCTACACCAGCAACCCTCTCCACAGCTATTCCGGCAGAACTTGC TGGTGCCATACCATTGATTGATAAATTCCAGGTTGAGGGATTCTTAAAGTTGATGCAGAAACAAATTCAATCCACTGGGAAACGTGGATTCTTTTCTAAA AAATCTGTAGGCCCTCAAGTTCGGGAAAAGTTCACATTTGAGGATATGCTGTGTTTCCAAAAGGATCCGATACCAACTTCATTGCTTAAAATTAATAGTG ACCTGGTAAGCCGCGCCACTAAACTCTTCCAGATAATTTTGAAGTACATGGGAGTTGATTCATCCGATAGAGCAGCTCCAACAAGCTTAGATGAACGAAT TGAGCTAGTTGGAAAATTGTTCAAGCACACATTAAAACGTGCAGAACTTCGAGATGAAATTTTTGCTCAGATTTCAAAGCAAACAAGGAATAACCCTGAC AGGCAATACTTGATTAAAGGATGGGAGCTAATGTACTTATGTGCTTCTTCTATGCCTCCTAGCAAGGACATCGGTGGATATTTGTCTGAGTATGTCCATA ATGTAGCTTATGGTGCAAGTACTGATTCTGAGGTCCAAATCCTTGCATTAAATACACTAAATGCTTTGAAGCGTTCTGTCAAAGCTGGTCCTAGGCATAC AATACCAGGACGTGAGGAAATTGAAGCTCTTCTAACTGGTCGAAAGCTTACAACAATAGTGTTTTTTCTGGATGAAACTTTTGAAGAAATCACATATGAC ATGGCGACGACAGTGTCTGATGCTGTTGAGGAACTCGCTGGGATAATTAAGCTATCAGCATTTCCTAGCTTCAGTCTCTTTGAATGCCATAAAGTTGTGT CTGGTTCCAAGTCACCTGATCCTGGGAATGAGGAGTACATTGGGTTAGATGATAACAAATATATTGGAGATTTGTTAGGAGAATTCAAGGCAGCCAAGGA TCGAAGCAAGGGAGAAATTTTGCATTGCAAACTGATATTTAAGAAAAAACTATTTCGGGAGTCAGATGAAGCTGTAACAGATCCAATGTTTGTGCAATTA TCATATGTTCAATTGCAACATGACTATATATTGGGCAATTATCCTGTTGGGAGGGAGGATGCTGCACAGTTGTCTGCGTTGCAGATATTGGTTGACATTG GATATGTTGGTAGTCCTGAATTATCTGTTGATTGGACTTCTCTCCTTGAGCGCTTTCTTCCCAGACAAATTGCAATTACACGAGGAAAGAGGGAGTGGGA GTTGGATATTCTTTCTCGTTATCATTCGATGGAAAATTTGACAAAGGATGATGCAAGACAACAATTTCTGCGGATATTAAGGTCACTTCCGTATGGCAAT TCCGTTTTCTTCAGCGTTCGCAAGATTGATGATCCTATTGGACTTCTGCCTGGACGGATTATTTTGGGCATTAACAAGCGAGGGGTGCATTTTTTCCGTC CAGTTCCAAAGGAATATTTACATTCAGCAGAATTAAGAGACATAATGCAGTTTGGTAGTAGCAATACTGCTGTGTTCTTCAAAATGAGAGTTGCTGGTGT TCTACACATATTTCAGTTTGAGACCAAGCAGGGAGAAGAAATTTGTGTTGCTCTTCAAACACATATAAATGATGTTATGCTGCGTCGTTATTCTAAAGCT CGGACAGCTGCTAGTGGCTCAGTGAATGGAGATGTTTCTAACAATTTTAAGCCTCCCAGTGCAGAAGTGCATGAAAAACGTTTACGTGAATTGTCTAGAA CTATTGAAGAGTCTCATAAGAAAACTGAACAGTTATTGGAAGAATTGCATGAGAAGCAAAATCAAGAAGTGAAATTGCAAGAGGAATTGGAGGCCTTGAA AGATTCCTTGAGATCAGAGAAGCAAAACTTGGCAGAAGTAGAGTGTGATCGTGATAGACTTAAGTCATTGTGTGCTGAAAGGGATGCAGCTCTTCAGGCT GCATTATCAGAAAAAAGAAGCGTGGAAACAAGTTTGGCCAACCTCAGTAACTTTGCAGTAGAGAAAAATACCAAAAACAATTTAGTTGGAGCTGATAATC AGGTGTTGCACAAGCTCCAGGATGAATTTAAACAGCGGAATGAGGAATTGCATGCAGCAGAAGAAAGGATGCAAAGATCAGCTAATGAAAAAATATTTCT CGAACAGAAGATCTCTAGACTCGAAAGGAAAGTTGAAGAGATGGAAGTTATTGAGAAAAACCTTGAGCAGGAACGCCAATCCTTAAAGTTTCGAGTGATT GAACTTGAACGGAAGCTGGAAACAGTCACACAAGATCTGGCCACTTCCAAATCAACTCTTGCAGTCGCGAATGCAGATTTGGCTGCATTGCATAACAATT TGAAGGAATTAGAGGAACTGAGAGAAATGAAAGAGGACATTGACAGAAAGAATGAGCAGACTGCTGCCATTTTGAAGATGCAAGCATCTCAACTTGCTGA GCTAGAAGTGCTTTATAAGGAAGAACAAGTTTTGCGGAAACGTTATTTTAATACTATAGAAGATATGAAAGGCAAGATCAGGGTTTTCTGTCGGTTGAGG CCTCTAAGTGAGAAAGAGATTTCTGAAAAGGATAGAGGCCTGCTTACAAGTATAGATGAATTTACAGTTGAGCATCCATGGAAAGATGACAAAGCAAAAC AACATATGTATGATCGAGTATTTGATGGAAGTGCTACTCAGGAAGATGTGTTCGAGGATACACGATATTTGGTTCAGTCTGCAGTAGATGGGTATAATGT TTGCATATTTGCTTATGGTCAAACTGGTTCCGGGAAGACATTTACCATTTATGGCTCTGAAGGCAATCCTGGACTGACACCACGGGCCACTTCAGAACTT TTTAAAATTTTAAGACGTGATAGCAATAAATTCTCATTTTCATTAAAGGCATATATGGTGGAATTGTATCAAGATACACTTGTGGACCTTCTATTACCAA AGAACATGAAGCGCTTAAAATTGGATATTAAGAAAGATTCAAAGGGTATGGTTTCTGTAGAAAATGTGACAGTTGTATCCATTGCTACATTTGAAGAATT ACAAAGCATTATTCAGAGAGGATCTGATAAGCGGCATATATCCGGGACTCAAATGAATGAAGAAAGTTCGAGGTCTCATTTGATACTTTCAGTTGTTATT GAAAGTACCAACCTTCAAACTCAGTCTGTTGCAAGGGGAAAGTTAAGTTTTGTGGACCTTGCTGGTTCAGAAAGGGTGAAGAAGTCAGGCTCTTCAGGTA GTCAACTTAAGGAAGCTCAAAGCATCAATAAATCACTTTCAGCCCTCGGGGATGTCATTAGTGCTTTATCTTCTGGTGGTCAACACATACCTTACAGGAA CCACAAGTTAACCATGTTAATGAGTGATTCCCTTGGTGGTAATGCCAAGACGCTTATGTTCGTGAATGTATCTCCAGCGGAATCAAATTTAGACGAGTCA TACAATTCTCTAATGTATGCATCAAGGGTTCGATCAATTGTTAATGATCCAAGCAAAAATGTTTCGTCAAAAGAGGTTGCTCGGCTTAAAAAACTGGTTG CATATTGGAAAGAGCAGGCAGGTAAGAAAGGGGATGGCGATGATCTTGAAGAGATTCAAGAACAAAGACTGGTGAGAGAGAAGACAGATGGTCGTCATTC AATGTAG
AA sequence Show only first row Show all	>Potri.011G146700.4 pacid=42780632 polypeptide=Potri.011G146700.4.p locus=Potri.011G146700 ID=Potri.011G146700.4.v4.1 annot-version=v4.1 MKLDVQSLMAQSIRSSRSSFSSTNGNEETPMHPSASFSNGDGYDSDGSNFATPTPATLSTAIPAELAGAIPLIDKFQVEGFLKLMQKQIQSTGKRGFFSK KSVGPQVREKFTFEDMLCFQKDPIPTSLLKINSDLVSRATKLFQIILKYMGVDSSDRAAPTSLDERIELVGKLFKHTLKRAELRDEIFAQISKQTRNNPD RQYLIKGWELMYLCASSMPPSKDIGGYLSEYVHNVAYGASTDSEVQILALNTLNALKRSVKAGPRHTIPGREEIEALLTGRKLTTIVFFLDETFEEITYD MATTVSDAVEELAGIIKLSAFPSFSLFECHKVVSGSKSPDPGNEEYIGLDDNKYIGDLLGEFKAAKDRSKGEILHCKLIFKKKLFRESDEAVTDPMFVQL SYVQLQHDYILGNYPVGREDAAQLSALQILVDIGYVGSPELSVDWTSLLERFLPRQIAITRGKREWELDILSRYHSMENLTKDDARQQFLRILRSLPYGN SVFFSVRKIDDPIGLLPGRIILGINKRGVHFFRPVPKEYLHSAELRDIMQFGSSNTAVFFKMRVAGVLHIFQFETKQGEEICVALQTHINDVMLRRYSKA RTAASGSVNGDVSNNFKPPSAEVHEKRLRELSRTIEESHKKTEQLLEELHEKQNQEVKLQEELEALKDSLRSEKQNLAEVECDRDRLKSLCAERDAALQA ALSEKRSVETSLANLSNFAVEKNTKNNLVGADNQVLHKLQDEFKQRNEELHAAEERMQRSANEKIFLEQKISRLERKVEEMEVIEKNLEQERQSLKFRVI ELERKLETVTQDLATSKSTLAVANADLAALHNNLKELEELREMKEDIDRKNEQTAAILKMQASQLAELEVLYKEEQVLRKRYFNTIEDMKGKIRVFCRLR PLSEKEISEKDRGLLTSIDEFTVEHPWKDDKAKQHMYDRVFDGSATQEDVFEDTRYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGSEGNPGLTPRATSEL FKILRRDSNKFSFSLKAYMVELYQDTLVDLLLPKNMKRLKLDIKKDSKGMVSVENVTVVSIATFEELQSIIQRGSDKRHISGTQMNEESSRSHLILSVVI ESTNLQTQSVARGKLSFVDLAGSERVKKSGSSGSQLKEAQSINKSLSALGDVISALSSGGQHIPYRNHKLTMLMSDSLGGNAKTLMFVNVSPAESNLDES YNSLMYASRVRSIVNDPSKNVSSKEVARLKKLVAYWKEQAGKKGDGDDLEEIQEQRLVREKTDGRHSM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	0	1
AT2G27900			unknown protein		Potri.001G212600 [exp]	3.46	0.9071
AT5G56270	WRKY	ATWRKY2, WRKY2,...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.001G472800 [exp]	3.74	0.9005	WRKY2.2
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.011G131900 [exp]	4.00	0.9071	ATK2.1
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.004G058100 [exp]	5.74	0.8934
AT4G39050			Kinesin motor family protein (...		Potri.009G122100 [exp]	7.74	0.9022
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.004G081100 [exp]	8.66	0.9069
AT3G45850			P-loop containing nucleoside t...		Potri.001G233700 [exp]	8.71	0.9066
AT1G49340		ATPI4K ALPHA, A...	Phosphatidylinositol 3- and 4-...		Potri.004G152400 [exp]	13.41	0.8943	ALPHA.13
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.006G075800 [exp]	15.87	0.8681
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.001G455300 [exp]	16.43	0.8651

Compare expression of checked genes

Potri.011G146700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.