Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10390 326 / 3e-110 Protein kinase superfamily protein (.1) AT1G33260 323 / 3e-109 Protein kinase superfamily protein (.1.2) AT1G51890 207 / 7e-60 Leucine-rich repeat protein kinase family protein (.1.2) AT1G51880 207 / 1e-59 RHS6 root hair specific 6 (.1) AT4G29990 203 / 2e-58 Leucine-rich repeat transmembrane protein kinase protein (.1) AT1G51860 202 / 4e-58 Leucine-rich repeat protein kinase family protein (.1) AT2G29000 202 / 5e-58 Leucine-rich repeat protein kinase family protein (.1) AT1G51870 200 / 2e-57 protein kinase family protein (.1) AT1G51830 198 / 2e-57 Leucine-rich repeat protein kinase family protein (.1) AT1G51820 198 / 1e-56 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G454800 [exp] 622 / 0 AT1G33260 323 / 5e-108 Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 192 / 2e-55 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 191 / 5e-55 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.002G241600 [exp] 181 / 5e-53 AT3G07070 543 / 0.0 Protein kinase superfamily protein (.1) Potri.006G242800 [exp] 186 / 1e-52 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.013G025700 [exp] 181 / 1e-52 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.019G094200 [exp] 179 / 1e-51 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094700 [exp] 183 / 3e-51 AT4G29990 652 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.019G094600 [exp] 182 / 6e-51 AT4G29990 636 / 0.0 Leucine-rich repeat transmembrane protein kinase protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016382 [exp] 335 / 1e-113 AT1G33260 280 / 2e-92 Protein kinase superfamily protein (.1.2) Lus10019741 [exp] 335 / 2e-113 AT1G33260 274 / 6e-90 Protein kinase superfamily protein (.1.2) Lus10013656 [exp] 317 / 6e-107 AT4G10390 282 / 2e-93 Protein kinase superfamily protein (.1) Lus10014071 [exp] 186 / 5e-53 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10019844 [exp] 186 / 8e-53 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10003836 [exp] 182 / 2e-52 AT3G02810 472 / 4e-162 Protein kinase superfamily protein (.1) Lus10003533 [exp] 182 / 2e-52 AT5G16500 468 / 1e-159 Protein kinase superfamily protein (.1) Lus10019237 [exp] 182 / 7e-51 AT2G37050 464 / 1e-148 Leucine-rich repeat protein kinase family protein (.1.2.3) Lus10002328 [exp] 174 / 1e-50 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10011866 [exp] 174 / 3e-50 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G147100.1 pacid=42780455 polypeptide=Potri.011G147100.1.p locus=Potri.011G147100 ID=Potri.011G147100.1.v4.1 annot-version=v4.1 ATGGGCTGCTTTCTCAGACTCAAATTCGGACACAAAAGAGACACCAAGAAAATCGATGCTGCTGCTGCTGCTGCTTCAAATGGTACTGGTGATCTTGACC CGAAAGAGGAAAAAGATTTTGATGGTACTAATGGCTGTGCAAGGAAATACAGTTGGAGTGAGATAGAGAGGCTGTCAATGAATTTCTCTCAGATTGTTGG ATCAGGAGGGTTTAGCACAGTATATTTGGCGCACTTGCCTGGTTCCAGCATTGGGGCAATCAAGATTCACTGCCCAAGTGACTATCTTAATAGAGTCTTC AAGCAAGAACTAGACATCCTGCTCCAACTTCAACATGACAACATTGTCAAGCTTCTAGGATATTGTGACAATCAAGACGAAGGTGCTTTGGTATTTGAGT ACGTTTCCAATGGAACCTTGCAAGACAAACTCCATGGTGCAGGGAGAGAAATTAGGGAGTCATCAAGAAGTACAGTACTTTCATGGAGAAAGAGAATGGC AATAGCTTACCAACTTGCTCAAGCTCTTGAATATTTACATGAAAAATGTCCTCTCCAAATTGTACATGGCGACATCAAACCTTCAAATATTTTACTCGAT GAGCAACTCAATTGCAAGCTATGTGATTTTGGGTTCGCAAAGATGGGATTTTCTTCTACAGTAATGAGTTCCAATAATAGGAAGCAAGTGATGATGGGTT CTCCGGGTTATACTGATCCACACTACCTTAGAACAGGAATAGCATCAAAGAAGAATGATGTGTACAGCTATGGAGTCATCATTTTGGAACTTGTGACGGG AATGGAGGCATTTTGCGAGGAAAGAGGCCAGGACCAGCTATTGACATCAATGATTGGACCCATTTTGAAGAGCATAATTGCTAGTGGTGATGAGTGCAAC CCGACGAAGGTGGCAGAAATGGTGGATCCAAAATTGGGAGGAGACTTCGAAGTCAAGGAAGTCATGGCTATGATTTCCCTTGCAGCTCTTTGCCTTGGAC AGTCTCCAAGTCTTAGGCCTTCTGCTGCACAAATCCTGCATACCATCAAGGAGAATGTAGCTTCCATTTCCCTCCTCTGCACACAGCAAAAGGATTTGCC AAATAAATGCTAG
AA sequence Show only first row Show all	>Potri.011G147100.1 pacid=42780455 polypeptide=Potri.011G147100.1.p locus=Potri.011G147100 ID=Potri.011G147100.1.v4.1 annot-version=v4.1 MGCFLRLKFGHKRDTKKIDAAAAAASNGTGDLDPKEEKDFDGTNGCARKYSWSEIERLSMNFSQIVGSGGFSTVYLAHLPGSSIGAIKIHCPSDYLNRVF KQELDILLQLQHDNIVKLLGYCDNQDEGALVFEYVSNGTLQDKLHGAGREIRESSRSTVLSWRKRMAIAYQLAQALEYLHEKCPLQIVHGDIKPSNILLD EQLNCKLCDFGFAKMGFSSTVMSSNNRKQVMMGSPGYTDPHYLRTGIASKKNDVYSYGVIILELVTGMEAFCEERGQDQLLTSMIGPILKSIIASGDECN PTKVAEMVDPKLGGDFEVKEVMAMISLAALCLGQSPSLRPSAAQILHTIKENVASISLLCTQQKDLPNKC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10390			Protein kinase superfamily pro...		Potri.011G147100 [exp]	0	1
AT1G73340			Cytochrome P450 superfamily pr...		Potri.017G154600 [exp]	2.64	0.8850
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	3.60	0.9157	CYP51.2
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.012G105500 [exp]	5.19	0.9006
AT1G28340		AtRLP4	receptor like protein 4 (.1)		Potri.011G056800 [exp]	5.74	0.8722
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	9.59	0.9023	SKU5.2
AT3G56750			unknown protein		Potri.006G040400 [exp]	11.74	0.8892
AT3G60740		TFCD, EMB133, C...	TITAN 1, TUBULIN FOLDING COFAC...		Potri.014G067400 [exp]	13.41	0.8798	Pt-TTN1.1
AT3G12110		ACT11	actin-11 (.1)		Potri.006G192700 [exp]	19.39	0.8955	Pt-ACT2.4
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Potri.016G000300 [exp]	19.59	0.8841
AT1G50710			unknown protein		Potri.011G090800 [exp]	21.11	0.8043

Compare expression of checked genes

Potri.011G147100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.