Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33250 648 / 0 Protein of unknown function (DUF604) (.1) AT5G41460 398 / 2e-133 Protein of unknown function (DUF604) (.1) AT4G23490 397 / 3e-133 Protein of unknown function (DUF604) (.1) AT4G11350 387 / 2e-129 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) AT2G37730 377 / 3e-125 Protein of unknown function (DUF604) (.1) AT1G01570 353 / 8e-117 Protein of unknown function (DUF604) (.1) AT1G07850 351 / 6e-115 Protein of unknown function (DUF604) (.1) AT4G00300 330 / 5e-104 fringe-related protein (.1.2) AT4G15240 309 / 2e-99 Protein of unknown function (DUF604) (.1) AT3G11420 292 / 2e-92 Protein of unknown function (DUF604) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G454600 [exp] 852 / 0 AT1G33250 629 / 0.0 Protein of unknown function (DUF604) (.1) Potri.009G026300 [exp] 401 / 5e-135 AT1G07850 637 / 0.0 Protein of unknown function (DUF604) (.1) Potri.001G100700 [exp] 397 / 4e-133 AT4G23490 757 / 0.0 Protein of unknown function (DUF604) (.1) Potri.003G131400 [exp] 395 / 1e-132 AT5G41460 732 / 0.0 Protein of unknown function (DUF604) (.1) Potri.012G107800 [exp] 379 / 1e-126 AT4G23490 546 / 0.0 Protein of unknown function (DUF604) (.1) Potri.006G089150 [exp] 373 / 4e-124 AT2G37730 626 / 0.0 Protein of unknown function (DUF604) (.1) Potri.016G101200 [exp] 370 / 9e-123 AT2G37730 618 / 0.0 Protein of unknown function (DUF604) (.1) Potri.010G199900 [exp] 346 / 1e-113 AT3G11420 481 / 7e-167 Protein of unknown function (DUF604) (.1) Potri.017G039600 [exp] 333 / 7e-109 AT1G05280 479 / 3e-167 Protein of unknown function (DUF604) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008293 [exp] 650 / 0 AT1G33250 611 / 0.0 Protein of unknown function (DUF604) (.1) Lus10033260 [exp] 600 / 0 AT1G33250 546 / 0.0 Protein of unknown function (DUF604) (.1) Lus10033262 [exp] 597 / 0 AT1G33250 544 / 0.0 Protein of unknown function (DUF604) (.1) Lus10018123 [exp] 394 / 1e-131 AT5G41460 589 / 0.0 Protein of unknown function (DUF604) (.1) Lus10017514 [exp] 380 / 3e-126 AT5G41460 759 / 0.0 Protein of unknown function (DUF604) (.1) Lus10032293 [exp] 379 / 3e-126 AT4G23490 740 / 0.0 Protein of unknown function (DUF604) (.1) Lus10036382 [exp] 341 / 3e-111 AT4G11350 580 / 0.0 Protein of unknown function (DUF604) (.1), Protein of unknown function (DUF604) (.2) Lus10027153 [exp] 318 / 6e-103 AT1G05280 479 / 4e-167 Protein of unknown function (DUF604) (.1) Lus10039692 [exp] 308 / 3e-99 AT1G05280 476 / 3e-166 Protein of unknown function (DUF604) (.1) Lus10002713 [exp] 308 / 5e-99 AT3G11420 460 / 5e-159 Protein of unknown function (DUF604) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02434 [poplar] [flax] Fringe Fringe-like
Representative CDS sequence Show only first row Show all	>Potri.011G147300.1 pacid=42782021 polypeptide=Potri.011G147300.1.p locus=Potri.011G147300 ID=Potri.011G147300.1.v4.1 annot-version=v4.1 ATGGACTTTTCCTCTCCTCCCTGCCGCTCGCCGCTCTCACTCTCCCGCACCCGCAACCGCAACCGTAGATGGCGTCAGAGTCGGACTGGCACCGCCGTCG TTGTGGTGGCTGCACTCGTGATTTCCACCACAGCCTGGCTGTCTCTTGTATTTTCTGGCACTACTGCTCGGTGTTGGCATAGGTTTAAGAATTGGGAAGG GAGTCCTCATACTCTCACATGGAAGCCACGAAGTCAGAAGCCAAATCAAAACGGGAAAGTTGACGGAATTTCGAGTTTCTCCACCGCCCCGTCTCTTCAA TTGGGCAGAAACAGGAGCCTGTCCGAGGCGGAGAGACGGAAGGTTGAAGCAGGATTGACGTTGAATCATATAGTTTTCGGCATTGCAGGATCCTCTCAGT TGTGGAAGAGAAGGAGAGAGTTTATAAGGCTTTGGTGGAGAAAGAATTCAATGAGGGGTCATGTTTGGTTAGAGGAGAAAGTGGATGATAAAGAATGGGA TGAATCATTGCCTGTGATTATGATTTCGGAGGATACTTCTCGGTTTCGGTACACGAACCCGACCGGACATCCTTCTGGGCTTCGGATTGGGCGCATTGTG TTGGAGACTTTTCGACTAGGTTTGTCTGATGTAAGGTGGTTTGTTTTAGGCGATGATGATACTATTTTTAATCTGGATAATTTGGTTAATGTGTTAAGTA AGTACGATTATAATGAAATGGTTTATGTTGGTGGCTCTTCGGAGAGTCACTCTGCGAATACTTATTTTAGTCATAATATGGCTTATGGAGGTGGGGGGAT TGCTATAAGTTATCCTCTTGCCGAGGCGCTTTATAGTGTTCTTGATGATTGTCTTGAGAGATATCATAAGTTATATGGAAGTGATGATAGGCTCCACGCT TGTATTTCGGAGCTCGGTGTTCCATTGTCAAGAGAGCTTGGGTTTCACCAGTGGGATATTAGGGGTAGTGCTCATGGTCTGCTATCTGCGCATCCGGTTG CACCCTTTGTATCGATTCATCATGTTGAAGCTGTGGATCCTTTTTACCCTGGGTTGAGTTCTCTGGATAGTTTGAAACTATTCACAAAGGCCATGAAGGT TGACCCTATGAGTTTCTTGCAGCGATCGATCTGTTATGACCGTGCACGCCGCCTATCCTTTTCCGTCTCGCTTGGTTATACTATTCAAGTGTTCCCGGGC ATTGTTCCTCCCCGGGTGCTTGAGCGCTCAGAAATGACTTACTCTGCTTGGAACAAGATTCATAGTCGGAATGAGTTTGATTTGGATACCAGGGATCCTT CCAAATCTGTTTGTAAGAGGCCGGTCCTCTTCTTCTTAGAAGACGTGGAAAGACAAGGCAACACTACTTTGGGTACATATGTGCAGGCAAGAATGAAAGA CGATTTGAAAAGAAGTTTTTTCTGCTTTACTCGTTCTGCTCCTTTGCCTTACGTGGAGAGCATTCAGGTGTTGGGGTATCCTCTGAAGAAGAACTGGCAT TTGTCACCACGTCGCCTGTGTTGCAAACTGAATCAAACAAGTGATGAACTCCTTACAATATCAGTTGGACAGTGTGAGAAAGGATCTTGTGGTTCTTTTG CTGATTCTGTGTGA
AA sequence Show only first row Show all	>Potri.011G147300.1 pacid=42782021 polypeptide=Potri.011G147300.1.p locus=Potri.011G147300 ID=Potri.011G147300.1.v4.1 annot-version=v4.1 MDFSSPPCRSPLSLSRTRNRNRRWRQSRTGTAVVVVAALVISTTAWLSLVFSGTTARCWHRFKNWEGSPHTLTWKPRSQKPNQNGKVDGISSFSTAPSLQ LGRNRSLSEAERRKVEAGLTLNHIVFGIAGSSQLWKRRREFIRLWWRKNSMRGHVWLEEKVDDKEWDESLPVIMISEDTSRFRYTNPTGHPSGLRIGRIV LETFRLGLSDVRWFVLGDDDTIFNLDNLVNVLSKYDYNEMVYVGGSSESHSANTYFSHNMAYGGGGIAISYPLAEALYSVLDDCLERYHKLYGSDDRLHA CISELGVPLSRELGFHQWDIRGSAHGLLSAHPVAPFVSIHHVEAVDPFYPGLSSLDSLKLFTKAMKVDPMSFLQRSICYDRARRLSFSVSLGYTIQVFPG IVPPRVLERSEMTYSAWNKIHSRNEFDLDTRDPSKSVCKRPVLFFLEDVERQGNTTLGTYVQARMKDDLKRSFFCFTRSAPLPYVESIQVLGYPLKKNWH LSPRRLCCKLNQTSDELLTISVGQCEKGSCGSFADSV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33250			Protein of unknown function (D...		Potri.011G147300 [exp]	0	1
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.013G119400 [exp]	7.34	0.8100
AT1G72430			SAUR-like auxin-responsive pro...		Potri.001G164300 [exp]	8.18	0.7378
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.001G250100 [exp]	9.43	0.8255
AT4G20800			FAD-binding Berberine family p...		Potri.001G459200 [exp]	18.70	0.8121
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024000 [exp]	25.61	0.8133
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024228 [exp]	28.46	0.8133
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G023964 [exp]	33.88	0.8069
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.002G200900 [exp]	47.89	0.7665
AT2G25870			haloacid dehalogenase-like hyd...		Potri.018G057500 [exp]	56.83	0.7850
AT2G46980			unknown protein		Potri.002G186200 [exp]	65.83	0.7775

Compare expression of checked genes

Potri.011G147300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.