Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33240 182 / 3e-48 Trihelix AT-GTL2, AT-GTL1 GT2-LIKE 1, GT-2-like 1 (.1) AT1G76880 169 / 4e-44 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT1G76890 159 / 8e-41 Trihelix AT-GT2, GT2 Duplicated homeodomain-like superfamily protein (.2) AT5G03680 134 / 2e-32 Trihelix PTL PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) AT3G10000 126 / 2e-30 Trihelix EDA31 embryo sac development arrest 31, Homeodomain-like superfamily protein (.1.2) AT5G28300 118 / 2e-27 Trihelix Duplicated homeodomain-like superfamily protein (.1) AT5G47660 90 / 6e-19 Trihelix Homeodomain-like superfamily protein (.1) AT3G25990 61 / 2e-09 Trihelix Homeodomain-like superfamily protein (.1) AT1G13450 59 / 3e-09 Trihelix GT-1 GT-1, Homeodomain-like superfamily protein (.1.2.3) AT5G01380 56 / 7e-08 Trihelix Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G454500 [exp] 764 / 0 AT1G33240 186 / 1e-49 GT2-LIKE 1, GT-2-like 1 (.1) Potri.002G068600 [exp] 165 / 8e-43 AT1G76880 441 / 3e-148 Duplicated homeodomain-like superfamily protein (.1) Potri.002G068400 [exp] 164 / 2e-42 AT1G76890 387 / 1e-127 Duplicated homeodomain-like superfamily protein (.2) Potri.005G191900 [exp] 157 / 1e-41 AT1G76890 216 / 2e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.005G192000 [exp] 159 / 9e-41 AT1G76890 392 / 6e-130 Duplicated homeodomain-like superfamily protein (.2) Potri.019G010200 [exp] 156 / 1e-40 AT1G76890 219 / 1e-64 Duplicated homeodomain-like superfamily protein (.2) Potri.001G309100 [exp] 156 / 2e-40 AT1G76880 350 / 2e-114 Duplicated homeodomain-like superfamily protein (.1) Potri.018G049500 [exp] 140 / 2e-36 AT1G76890 158 / 5e-44 Duplicated homeodomain-like superfamily protein (.2) Potri.018G049301 [exp] 137 / 2e-34 AT1G76890 158 / 2e-42 Duplicated homeodomain-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028584 [exp] 167 / 2e-44 AT1G76880 262 / 5e-81 Duplicated homeodomain-like superfamily protein (.1) Lus10029778 [exp] 168 / 2e-43 AT1G76890 311 / 3e-96 Duplicated homeodomain-like superfamily protein (.2) Lus10018887 [exp] 165 / 1e-42 AT1G76880 451 / 1e-151 Duplicated homeodomain-like superfamily protein (.1) Lus10042806 [exp] 161 / 2e-41 AT1G76890 337 / 9e-108 Duplicated homeodomain-like superfamily protein (.2) Lus10018888 [exp] 160 / 3e-41 AT1G76880 360 / 2e-117 Duplicated homeodomain-like superfamily protein (.1) Lus10033504 [exp] 147 / 1e-37 AT1G76890 323 / 8e-105 Duplicated homeodomain-like superfamily protein (.2) Lus10027718 [exp] 145 / 3e-37 AT5G03680 297 / 3e-95 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10020873 [exp] 145 / 7e-37 AT1G76890 320 / 2e-103 Duplicated homeodomain-like superfamily protein (.2) Lus10023872 [exp] 139 / 2e-35 AT5G03680 278 / 3e-88 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1) Lus10035570 [exp] 139 / 9e-35 AT5G03680 297 / 2e-94 PETAL LOSS, Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G147400.3 pacid=42780408 polypeptide=Potri.011G147400.3.p locus=Potri.011G147400 ID=Potri.011G147400.3.v4.1 annot-version=v4.1 ATGCAACAAGGAGGTGGAGAAAGAGGGTCATCACAGTCACAATATGGAGTGCCACACCAACAGGAAGGTGATGTACCTATAACAACTCCTACATCTGCTG CACTAGCAACCCACATGCAGCAGCAAGTAGTAGAAGAAGCATCGCCCATTAGCAGCAGACCTCCTGCCACAGCTGCCACAACAAGTGGGGTTATGAATTT AGATGAATTTATTAGACTTTCAGGGAGTGGTGGTGCAGAAGAAGATATTGTTGCTGGAGAAGATGCAGATCGAACAGGAGGTATTGCTAGTGGCAATAGG TGGCCAAGGCAAGAAACTCATGCCCTTTTGCAAATTAGGTCTGAAATGGATGCTGCTTTTCGTGATGCCACCTTAAAAGGTCCTCTATGGGAGGATGTTT CAAGGAAGCTAGCAGAGATGGGATACAAGAGAAATGCCAAGAAATGTAAAGAAAAGTTTGAGAACGTGCACAAGTATTATAAAAGAACAAAGGAAGGTAG AGCCGGTCGTCAAGATGGCAAAAGCTACAGGTTTTTTACCCAGCTTGAAGCTTTGCATAATACTACTGGTAGTGGCGGTGCTTCTGCTAGTGTCATCAAT ATGTCTGGTGCTGCTCCTCAGCAGATTTTCACTACAACAACAAGCAGTCTGGATGTTGCTCCTGTTTCTGTTGGAATTCCTATGCCTATTTCGTCTTCTG TTAGAATTCCTCCACCTTCTTCTCGGGTACTTCAACCAGCTTCAAATATTGGCTCAATGTTCCCTCCTGATTTGGGGGCAACAGTGGCCGCAGCTGCTGC AGGTGCTGGCCCTGTTGGAATCAGCTTCTCGTCGAATGGGTCTTCTTCTTCTCCAAGTTCTGAAGACGATGACGACGACGAGGAGGAGGATGAAGAGCTA TTAGGAGGACAACCATCAGCTACGGCTGCTGGTACGAGTCGAAAACGTAAAAGGGCATCATTATCGTCAGCTAAAGGAGAAACTCATCGGATGATGGAGT TTTTTGAGGGACTAATGAAACAGCTCATGCAGAAGCAAGAGGCGATGCAACAGAGATTTTTGGAGGCGATTGAGAAGAGGGAGCAAGATAGGATGATAAG AGATGAAGCTTGGAAAAGGCAAGAGATGGCTAGATTGAGTCGTGAACATGAGATTATGGCTCAAGAACGGGCTATTTCTGCTAGTCGAGATGCTGCTATT GTTGCCTTTCTACAGAAAATTACAGGCCAAACTATTCATTTGCCTACGCCTGTATCAATGGCTCCTCCATTTTCACTACCTCCACCACCACCACCACCAG AACCGCAACCGGTTCAAGTAACGCCATTGTTCACTGTCTCAACCCAACCACCACCACCACCACAACTTCAACCCATGCCACAGTCACAAGTAACACCACA ACAAAATATACAACAGCCACAACCACTTCCCCAACAGCAGCACCACCACCACCAACAAGGGCATCGTCAACACCAACTACCCATTTCTTCAGATATAGTA ATGGCGGTCCCGGAACAACAAATAATACCACAGGAAATTGGAAGTGGTGGCGGTAGTGGGAGCGAGCCAGCGTCATCAAGATGGCCAAAGCCAGAAGTTC TTGCACTTATAAAGTTGAGAAGCGGGCTTGAAACTAAATACCAAGAAGCTGGGCCTAAGGGGCCACTTTGGGAAGAAATTTCAACAGGAATGCAAAGGAT GGGCTATAAAAGAAGTGCCAAAAGATGCAAAGAAAAATGGGAGAATATCAACAAGTACTTCAAGAAAGTAAAAGAAAGTAACAAAAATCGCTCAGAAGAT GCCAAGACTTGCCCTTATTTTCATGAGCTTGATGCCCTTTATAGGAAAAAGATTCTTGGTGGAAGTGGTGGTGGTGGTGGTGGTGGAAGCACCTCTACTA GTGGCTTTGACAGCCAAAGTAGGCCACAAGAACAGCAGCAGCAAGAGAGCTTACAATTGGACCCAATGCCACATCCAATGCAGCAGCCACCGCAACAGAC ACAAACCACAGAATCACAAAATAAAAATGGGGCTGGTGGTGATGTTCAAGCAAGCAATATAGGTTTGCCTGGGAATCTCGGAGAAGGAAATGGAGGAGCA GCAAAGAAGCCAGAAGACATCGTGAAGGAGTTGAAGAAACAGCAGGGGACTCAACAACAACAACAGCAACAGCAACAGCAACAGCAACAACAGTTAATGG TTGATGGCTATGATAAGATAGAGGAAGGTGACAGTGAAAACGTAAATGAAGATGAATATGACGACGAAGACGAGGGCGACGACGATGATGAAGAGGAGGA GGAGGAAGGGTTACAAGAGGAGAGGAAAATGGCATACAAGATAGAGTTCCAAAGGCAGAACACAAGTAGTGCTGCCAATGGAGGAGGGACTGGCGGGGCA CCCTCCTTTTTGGCCATGGTTCAATAG
AA sequence Show only first row Show all	>Potri.011G147400.3 pacid=42780408 polypeptide=Potri.011G147400.3.p locus=Potri.011G147400 ID=Potri.011G147400.3.v4.1 annot-version=v4.1 MQQGGGERGSSQSQYGVPHQQEGDVPITTPTSAALATHMQQQVVEEASPISSRPPATAATTSGVMNLDEFIRLSGSGGAEEDIVAGEDADRTGGIASGNR WPRQETHALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYKRNAKKCKEKFENVHKYYKRTKEGRAGRQDGKSYRFFTQLEALHNTTGSGGASASVIN MSGAAPQQIFTTTTSSLDVAPVSVGIPMPISSSVRIPPPSSRVLQPASNIGSMFPPDLGATVAAAAAGAGPVGISFSSNGSSSSPSSEDDDDDEEEDEEL LGGQPSATAAGTSRKRKRASLSSAKGETHRMMEFFEGLMKQLMQKQEAMQQRFLEAIEKREQDRMIRDEAWKRQEMARLSREHEIMAQERAISASRDAAI VAFLQKITGQTIHLPTPVSMAPPFSLPPPPPPPEPQPVQVTPLFTVSTQPPPPPQLQPMPQSQVTPQQNIQQPQPLPQQQHHHHQQGHRQHQLPISSDIV MAVPEQQIIPQEIGSGGGSGSEPASSRWPKPEVLALIKLRSGLETKYQEAGPKGPLWEEISTGMQRMGYKRSAKRCKEKWENINKYFKKVKESNKNRSED AKTCPYFHELDALYRKKILGGSGGGGGGGSTSTSGFDSQSRPQEQQQQESLQLDPMPHPMQQPPQQTQTTESQNKNGAGGDVQASNIGLPGNLGEGNGGA AKKPEDIVKELKKQQGTQQQQQQQQQQQQQQLMVDGYDKIEEGDSENVNEDEYDDEDEGDDDDEEEEEEGLQEERKMAYKIEFQRQNTSSAANGGGTGGA PSFLAMVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.011G147400 [exp]	0	1
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Potri.004G163800 [exp]	2.82	0.8451
AT2G35800		SAMTL	S-adenosyl methionine transpor...		Potri.008G043700 [exp]	4.47	0.8305
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.004G034800 [exp]	5.29	0.8461
AT1G33240	Trihelix	AT-GTL2, AT-GTL...	GT2-LIKE 1, GT-2-like 1 (.1)		Potri.001G454500 [exp]	7.48	0.8392
AT3G22380		TIC	time for coffee (.1.2)		Potri.002G052300 [exp]	7.74	0.8408
AT5G38640			NagB/RpiA/CoA transferase-like...		Potri.004G103700 [exp]	9.38	0.8283
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.002G144200 [exp]	10.09	0.8471
AT5G53060			RNA-binding KH domain-containi...		Potri.015G011100 [exp]	12.44	0.8128
AT5G09860		AtTHO1, AtHPR1	nuclear matrix protein-related...		Potri.003G194000 [exp]	13.22	0.8076
AT3G22170	FAR1_related	FHY3	far-red elongated hypocotyls 3...		Potri.006G020700 [exp]	13.26	0.8488	Pt-FHY3.2

Compare expression of checked genes

Potri.011G147400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.