Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33230 485 / 4e-173 TMPIT-like protein (.1) AT4G10430 484 / 1e-172 TMPIT-like protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G454400 [exp] 586 / 0 AT1G33230 526 / 0.0 TMPIT-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010151 [exp] 509 / 0 AT4G10430 501 / 4e-179 TMPIT-like protein (.1.2.3) Lus10008294 [exp] 464 / 4e-164 AT4G10430 464 / 2e-164 TMPIT-like protein (.1.2.3) Lus10017356 [exp] 438 / 3e-154 AT4G10430 429 / 4e-151 TMPIT-like protein (.1.2.3) Lus10033263 [exp] 373 / 2e-128 AT4G10430 380 / 2e-131 TMPIT-like protein (.1.2.3) Lus10033261 [exp] 330 / 7e-113 AT1G33230 327 / 3e-112 TMPIT-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07851 [poplar] [flax] TMPIT TMPIT-like protein
Representative CDS sequence Show only first row Show all	>Potri.011G147500.2 pacid=42781804 polypeptide=Potri.011G147500.2.p locus=Potri.011G147500 ID=Potri.011G147500.2.v4.1 annot-version=v4.1 ATGGCTGCGCCGGCGAATAATAACAACAACAATAATAGTCCGGCGGCGGCGGCGGCGGAGGATACTGTGGAGGAAGAGGTAGCTCGAGTGGTGGAACAAG CGAAGGAGTTGCAAGAAACCGCAGCTTCTTTAATTGCTAAATCTTCACATGATGAACAATCTCTTCGACAGAAAGCTCTCTCTCTCGAATCTTCTGTTCG CCGTTGCCGTACACTCCTTAACCGCAACAATCGCCTCGCTCCTAAATTAGTTGCCAAGCTTGAAGAAGATTTACAGAAAGCAAGATGTATTATAACTGAT GGAGATGCTTCCGCTTTTCTTCCTTCAAAGCCTCAAGGGCGTTTTCTAAAAATGTTTTTGGGACCGATTAATGTGCGGGCGTCTCGAAAAGATGTGCAGT GGAAGGTTAAAGAGGAGTATAACAGCTACAGGGATAGGACTGCGCTTTTGTTTCTTCTTTTCCCATCGGTTTTACTGTGTTTAAGATCTTGGGTTTGGAA TGGGTGCTTGCCTACGTTTCCGGTTCAATTGTATCAGGCCTGGCTATTGTTTCTCTACACTGGATTGGCTTTGAGAGAGAACATATTGAGAGCCAATGGA AGTGATATTCGTCCATGGTGGATATACCATCACTATTGTGCGATGATTATGGCCCTTGTTAGTCTCACTTGGGACATCAAAGGACAACCAAATTGTGCTC AGAAGCAGAGAGGGGTTGAACTGTTCTTGCAATGGGCTATGATGCAAGGAGTAGCAATGCTTTTGCAAAATAGATATCAACGCCAGAGACTCTATACTCG TATTGCGTTGGGAAAGGCTAAGCGAATGGATGTTGTATGGGGAGAAACAGCTGGGGTGGATGGGCAATTGTGGCTGTTGTATCCTATTCTCTTCATTCTG CAGGGTTTTGAGGCATATGTTGGACTACAGCTGCTGAGGACTGCATTCAAAGGGGTCACCTCTGAATGGCAGGTTATTTTCTGCGGTATCCTTCTGGTCT TCATGGCGGTTGGGAACTTCTTAAACACAGTACAGACACTAATGGCAAAGTCAAGGTTTAAGGCTAAAATGAAAAGTAAGAGCAAGCAGGAATTGGATTG A
AA sequence Show only first row Show all	>Potri.011G147500.2 pacid=42781804 polypeptide=Potri.011G147500.2.p locus=Potri.011G147500 ID=Potri.011G147500.2.v4.1 annot-version=v4.1 MAAPANNNNNNNSPAAAAAEDTVEEEVARVVEQAKELQETAASLIAKSSHDEQSLRQKALSLESSVRRCRTLLNRNNRLAPKLVAKLEEDLQKARCIITD GDASAFLPSKPQGRFLKMFLGPINVRASRKDVQWKVKEEYNSYRDRTALLFLLFPSVLLCLRSWVWNGCLPTFPVQLYQAWLLFLYTGLALRENILRANG SDIRPWWIYHHYCAMIMALVSLTWDIKGQPNCAQKQRGVELFLQWAMMQGVAMLLQNRYQRQRLYTRIALGKAKRMDVVWGETAGVDGQLWLLYPILFIL QGFEAYVGLQLLRTAFKGVTSEWQVIFCGILLVFMAVGNFLNTVQTLMAKSRFKAKMKSKSKQELD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	0	1
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	3.74	0.9226
AT5G55950			Nucleotide/sugar transporter f...		Potri.001G370800 [exp]	4.89	0.9089
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	6.92	0.9107
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.017G139300 [exp]	7.21	0.9083
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Potri.018G025000 [exp]	8.12	0.8938
AT4G15470			Bax inhibitor-1 family protein...		Potri.008G199200 [exp]	8.83	0.8813
AT1G55830			unknown protein		Potri.001G370700 [exp]	9.27	0.8644
AT3G24740			Protein of unknown function (D...		Potri.002G216600 [exp]	10.39	0.8716
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	10.72	0.9078	Pt-CESA2.1
AT2G02180		TOM3	tobamovirus multiplication pro...		Potri.008G144400 [exp]	10.81	0.8707	Pt-TOM3.1

Compare expression of checked genes

Potri.011G147500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.