Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33170 985 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G10440 976 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G45750 768 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G00750 752 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G26850 721 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G18030 696 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G43200 611 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G31850 536 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G19120 528 / 0 ERD3 early-responsive to dehydration 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G00740 479 / 4e-163 QUA3 QUASIMODO 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G454300 [exp] 1187 / 0 AT1G33170 961 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G137300 [exp] 815 / 0 AT4G00750 874 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G139000 [exp] 799 / 0 AT2G45750 880 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.014G075700 [exp] 786 / 0 AT4G00750 955 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G154400 [exp] 765 / 0 AT4G00750 944 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.003G087600 [exp] 733 / 0 AT4G18030 989 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G146400 [exp] 731 / 0 AT4G18030 1008 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G147800 [exp] 728 / 0 AT1G26850 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.010G094100 [exp] 722 / 0 AT1G26850 1031 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017357 [exp] 1023 / 0 AT1G33170 948 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10010152 [exp] 1021 / 0 AT1G33170 952 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10008298 [exp] 1018 / 0 AT4G10440 957 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10005764 [exp] 771 / 0 AT2G45750 811 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10012830 [exp] 723 / 0 AT1G26850 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10030479 [exp] 723 / 0 AT1G26850 1057 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036747 [exp] 721 / 0 AT1G26850 1042 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10037180 [exp] 720 / 0 AT1G26850 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10011045 [exp] 699 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10003014 [exp] 699 / 0 AT4G18030 963 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.011G147600.1 pacid=42780670 polypeptide=Potri.011G147600.1.p locus=Potri.011G147600 ID=Potri.011G147600.1.v4.1 annot-version=v4.1 ATGGCAAATGGATCACCAAAGCAGCATCAGCTAGAAGCAAAGAGAAAGCGCCTAACTTGGATTCTTGGGGTCAGCGGCCTTTGCGTTTTGTTCTATGTTT TGGGAGCTTGGCAGCATACCGCAGCCCCCACAAATCTAGCCCAGTCCATCACTAAAGTAGCTTGTGATGTTTCAAACGTTGCCGGGGTTAGTTCCAATCC ATCATCAGAATCAGCTGTCTTGGACTTTAATAGCCATCATCAGATTCAGATCAACAACACTGATTCAGTTAATGAGATTCCACCATGCGACATGTCCTAT AGTGAGTACACTCCTTGCCAAGATCCTCAAAGGGGAAGGAAATTTGATAGGAACATGTTGAAATATAGAGAGAGGCATTGCCCAACAAAGGATGAGTTGC TTCTTTGCTTGATACCTGCTCCTCCTAAATATAAGACCCCTTTTAAATGGCCACAAAGCCGTGATTATGCCTGGTATGATAACATTCCCCATAATGAACT TAGCATTGAAAAGGCTGTGCAGAATTGGATTCAAGTTGAGGGTGACCGATTTAGATTCCCCGGTGGAGGCACCATGTTCCCCCGTGGAGCTGATGCTTAT ATTGATGACATTAGTGAGCTCATTCCTCTTACTGATGGAAGCATCAGAACTGCTATTGACACAGGCTGTGGTGTTGCGAGTTGGGGTGCATACCTGTTGA AGAGGGACATTATAGCAATGTCTTTTGCACCAAGGGATACGCATGAAGCACAGGTCTGGTTTGCATTGGAGAGGGGAGTTCCTGCTATGATTGGCATCAT GGCTTCGCAAAGGCTTCCTTACCCAGCAAGGGCTTTTGACATGGCTCATTGTTCCCGTTGCTTGATACCATGGCATCAAAATGATGGTTTGTATCTGATT GAAGTGGATAGAGTTTTAAGGCCTGGTGGTTATTGGATTCTATCTGGTCCTCCTATTCACTGGAAGAAATACTGGAGAGGTTGGGAAAGAACCGCGAAAG ACTTGAAGCAAGAGCAGGATGCTATCGAGGATGTAGCCAAGCGCCTGTGCTGGAAGAAGGTGGTTGAAAAGGGTGATCTTTCAGTCTGGCAAAAGCCCCT TAACCACATCGAGTGCGTTGCAAGCAGGAAGATCTATAAAACACCACATATATGCAAGTCAGACAATCCAGATGCTGCCTGGTATAAAGACATGGAAACT TGCATAACTCCATTGCCAGAGGTAAGCGGCTCGGATGAAGTTGCTGGTGGTGTAGTGGAGAAATGGCCAGCACGAGCATTCGCAGTCCCTCCAAGAATTC GCAGTGGTTCTATTCCAGGAATCAATGCTGAGAAATTCAAGGAGGATAATGATCTGTGGAAGGATAGAGTGGCGCATTATAAGAATATCATTAGTCCTCT CACCCAAGGCAGATTCCGGAACATAATGGACATGAATGCTCAACTTGGAGGATTAGCCGCGGCCTTGGTAAAATATCCGGTGTGGGTTATGAATGTGGTA CCTGCCAATTCAAATCCAGACACACTTGGTGTGATCTATGAACGAGGGTTTATTGGCTCATATCAGGATTGGTGTGAGGCAGTCTCAACATATCCAAGAA CATATGATCTCATCCATGCTGGTGGGGTGTTCAGTATATATCAGGACAGGTGTGACATAACCCACATTCTGCTGGAGATGGATAGAATTCTAAGGCCAGA AGGGACAGTGATATTCAGGGATACAGTAGAGGTTCTTGTGAAGATTCAGACTATAACAAATGGCATGAGATGGAAGAGCCAAATTATGGACCATGAAAGT GGACCCTTTAATCCAGAGAAAATTCTTGTTGCTGTCAAAACTTACTGGACTGGTGAAGCTAAGCAAAAACAACAGTAG
AA sequence Show only first row Show all	>Potri.011G147600.1 pacid=42780670 polypeptide=Potri.011G147600.1.p locus=Potri.011G147600 ID=Potri.011G147600.1.v4.1 annot-version=v4.1 MANGSPKQHQLEAKRKRLTWILGVSGLCVLFYVLGAWQHTAAPTNLAQSITKVACDVSNVAGVSSNPSSESAVLDFNSHHQIQINNTDSVNEIPPCDMSY SEYTPCQDPQRGRKFDRNMLKYRERHCPTKDELLLCLIPAPPKYKTPFKWPQSRDYAWYDNIPHNELSIEKAVQNWIQVEGDRFRFPGGGTMFPRGADAY IDDISELIPLTDGSIRTAIDTGCGVASWGAYLLKRDIIAMSFAPRDTHEAQVWFALERGVPAMIGIMASQRLPYPARAFDMAHCSRCLIPWHQNDGLYLI EVDRVLRPGGYWILSGPPIHWKKYWRGWERTAKDLKQEQDAIEDVAKRLCWKKVVEKGDLSVWQKPLNHIECVASRKIYKTPHICKSDNPDAAWYKDMET CITPLPEVSGSDEVAGGVVEKWPARAFAVPPRIRSGSIPGINAEKFKEDNDLWKDRVAHYKNIISPLTQGRFRNIMDMNAQLGGLAAALVKYPVWVMNVV PANSNPDTLGVIYERGFIGSYQDWCEAVSTYPRTYDLIHAGGVFSIYQDRCDITHILLEMDRILRPEGTVIFRDTVEVLVKIQTITNGMRWKSQIMDHES GPFNPEKILVAVKTYWTGEAKQKQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33170			S-adenosyl-L-methionine-depend...		Potri.011G147600 [exp]	0	1
AT1G64480		CBL8	calcineurin B-like protein 8 (...		Potri.001G090200 [exp]	11.57	0.8587
AT3G08840			D-alanine--D-alanine ligase fa...		Potri.006G106000 [exp]	19.18	0.7593
AT2G38310		RCAR10, PYL4	regulatory components of ABA r...		Potri.008G073400 [exp]	44.35	0.8163
AT1G68450		PDE337	PIGMENT DEFECTIVE 337, VQ moti...		Potri.006G199300 [exp]	80.99	0.7824
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.012G062200 [exp]	87.97	0.7919
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Potri.009G026900 [exp]	136.93	0.7832
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.007G095000 [exp]	139.97	0.7827
AT4G27220			NB-ARC domain-containing disea...		Potri.019G011169 [exp]	151.62	0.7725
AT3G02040		AtGDPD1, SRG3	Glycerophosphodiester phosphod...		Potri.001G325200 [exp]	221.19	0.7601	Pt-SRG3.1
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Potri.002G129700 [exp]	289.98	0.7415	KO,GA3.1

Compare expression of checked genes

Potri.011G147600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.