Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G72680 571 / 0 ATCAD1 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) AT2G21890 339 / 4e-115 CAD3, ATCAD3 cinnamyl alcohol dehydrogenase homolog 3 (.1) AT2G21730 337 / 2e-114 CAD2, ATCAD2 cinnamyl alcohol dehydrogenase homolog 2 (.1) AT4G37970 335 / 6e-114 ATCAD6 cinnamyl alcohol dehydrogenase 6 (.1) AT4G39330 335 / 8e-114 AtCAD1, ATCAD9 cinnamyl alcohol dehydrogenase 9 (.1.2) AT4G37980 319 / 9e-108 ELI3-1, ATCAD7 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) AT4G37990 298 / 3e-99 CAD-B2, ATCAD8, ELI3-2 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) AT3G19450 283 / 3e-93 CAD-C, ATCAD4 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) AT4G34230 277 / 3e-91 CAD-5, ATCAD5, CAD-D, CAD6 cinnamyl alcohol dehydrogenase 5 (.1.2) AT5G43940 84 / 5e-18 PAR2, ATGSNOR1, HOT5, GSNOR, ADH2 PARAQUAT RESISTANT 2, sensitive to hot temperatures 5, S-NITROSOGLUTATHIONE REDUCTASE, ALCOHOL DEHYDROGENASE 2, GroES-like zinc-binding dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G148200 [exp] 720 / 0 AT1G72680 561 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.006G024300 [exp] 536 / 0 AT1G72680 521 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.003G196700 [exp] 524 / 0 AT1G72680 469 / 1e-166 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.016G023360 [exp] 513 / 0 AT1G72680 492 / 1e-175 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.016G023300 [exp] 511 / 0 AT1G72680 489 / 1e-174 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.006G024250 [exp] 483 / 4e-172 AT1G72680 452 / 4e-160 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Potri.001G307200 [exp] 360 / 2e-123 AT4G39330 572 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Potri.016G078300 [exp] 349 / 2e-119 AT4G37970 482 / 2e-171 cinnamyl alcohol dehydrogenase 6 (.1) Potri.016G065300 [exp] 347 / 2e-118 AT4G37990 492 / 1e-175 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010149 [exp] 592 / 0 AT1G72680 550 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Lus10017354 [exp] 581 / 0 AT1G72680 539 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 1, cinnamyl-alcohol dehydrogenase (.1) Lus10035956 [exp] 327 / 2e-110 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10002089 [exp] 326 / 3e-110 AT4G39330 577 / 0.0 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10017285 [exp] 323 / 4e-109 AT4G39330 413 / 1e-144 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10025706 [exp] 323 / 5e-109 AT4G37990 509 / 0.0 CINNAMYL-ALCOHOL DEHYDROGENASE B2, ARABIDOPSIS THALIANA CINNAMYL-ALCOHOL DEHYDROGENASE 8, elicitor-activated gene 3-2 (.1) Lus10005611 [exp] 322 / 2e-108 AT4G39330 409 / 9e-143 cinnamyl alcohol dehydrogenase 9 (.1.2) Lus10023268 [exp] 321 / 2e-108 AT4G37980 471 / 1e-167 CINNAMYL-ALCOHOL DEHYDROGENASE 7, elicitor-activated gene 3-1 (.1.2) Lus10014104 [exp] 317 / 8e-107 AT3G19450 530 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1) Lus10019811 [exp] 316 / 2e-106 AT3G19450 531 / 0.0 CINNAMYL ALCOHOL DEHYDROGENASE 4, GroES-like zinc-binding alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00107 [poplar] [flax] ADH_zinc_N Zinc-binding dehydrogenase CL0296 [poplar] [flax] GroES PF08240 [poplar] [flax] ADH_N Alcohol dehydrogenase GroES-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G148100.1 pacid=42781296 polypeptide=Potri.011G148100.1.p locus=Potri.011G148100 ID=Potri.011G148100.1.v4.1 annot-version=v4.1 ATGAGCTCCGAGGGTGTTAAAGATGACTGTCTTGCGTGGGCAGCGAGAGACCCCTCTGGAGTCTTATCTCCTTACAAGTTTAGTCGCAGGGCTCTTGGAA AAGATGATGTTTCGCTAAAAATAACGCACTGTGGAGTTTGCTATGCTGATGTTATCTGGAGTAAGAACAAGCATGGAGATTCGCGCTATCCATTGGTGCC TGGACATGAGATTGCTGGAATTGTAAAGGAAGTTGGTTCCAGTGTCAGCAACTTCAAGGTTGGTGACCATGTTGGAGTAGGCACTTATGTTAATTCTTGC AGAGAATGTGAGCATTGCAATGACAAGGAAGAAGTTAGTTGTGAAAAAGGATCGGTTTTCACTTTTAATGGCATTGATGCTGATGGCTCGATTACAAAGG GTGGATATTCTAGCTACATCGTTGTCCATGAAAGGTACTGCTTTCGGATACCTGATGGTTATCCTTTGGCCTCTGCAGCACCTCTGCTTTGTGCTGGAAT CACTGTGTACAACCCCATGATGCGACATAAGATGAACCAACCAGGTAAATCTCTTGGAGTGATTGGGCTCGGTGGTCTGGGTCACATGGCAGTGAAGTTT GGCAAGGCTTTTGGATTGAAAGTAACTGTTTTAAGCACAAGCGTATCTAAAAAGGAGGAAGCCCTGAGTGTGCTCGGCGCAGACAATTTCGTGATTACAT CCGATCAAGCGCAGATGAAGGCCTTGTACAAATCACTAGACTTCATAATCGACACAGCATCCGGCGATCACCCATTTGATCCATACTTGTCTCTTTTGAA GACTGCTGGTGTTTTTGTTCTTGTTGGGTTCCCAAGTGAAGTCAAATTCAGTCCTGCGAGCCTCAATATCGGTATGAAAACTGTAGCTGGTAGCATAACA GGTGGTACAAGAGTGATCCAAGAGATGTTGGACTTCTGTGCTGCTAATAAAATTTACCCCGGGATCGAAGTAATTCCAATTCAGTATATAAATGAAGCTC TTGAGAGGATGGTAAAGAACGACGTGAAGTACCGGTTTGTGATTGATATTGAGAACTCCTTGAAGTGA
AA sequence Show only first row Show all	>Potri.011G148100.1 pacid=42781296 polypeptide=Potri.011G148100.1.p locus=Potri.011G148100 ID=Potri.011G148100.1.v4.1 annot-version=v4.1 MSSEGVKDDCLAWAARDPSGVLSPYKFSRRALGKDDVSLKITHCGVCYADVIWSKNKHGDSRYPLVPGHEIAGIVKEVGSSVSNFKVGDHVGVGTYVNSC RECEHCNDKEEVSCEKGSVFTFNGIDADGSITKGGYSSYIVVHERYCFRIPDGYPLASAAPLLCAGITVYNPMMRHKMNQPGKSLGVIGLGGLGHMAVKF GKAFGLKVTVLSTSVSKKEEALSVLGADNFVITSDQAQMKALYKSLDFIIDTASGDHPFDPYLSLLKTAGVFVLVGFPSEVKFSPASLNIGMKTVAGSIT GGTRVIQEMLDFCAANKIYPGIEVIPIQYINEALERMVKNDVKYRFVIDIENSLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.011G148100 [exp]	0	1
AT1G72680		ATCAD1	CINNAMYL ALCOHOL DEHYDROGENASE...		Potri.011G148200 [exp]	1.41	0.9399
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073341 [exp]	5.00	0.8584
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.008G153300 [exp]	9.48	0.8636
AT5G65660			hydroxyproline-rich glycoprote...		Potri.019G055500 [exp]	26.21	0.8610
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.014G043500 [exp]	32.31	0.8555
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G009900 [exp]	35.70	0.8047
AT5G63520			unknown protein		Potri.011G010100 [exp]	39.59	0.8384
AT5G04260		WCRKC2	WCRKC thioredoxin 2 (.1)		Potri.008G036400 [exp]	40.80	0.8145
AT4G30340		ATDGK7	diacylglycerol kinase 7 (.1)		Potri.006G174700 [exp]	44.03	0.7476
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.006G036000 [exp]	44.09	0.8439

Compare expression of checked genes

Potri.011G148100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.