Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07050 261 / 5e-84 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G75500 250 / 5e-80 WAT1 Walls Are Thin 1 (.1.2) AT1G21890 246 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G64700 245 / 1e-78 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 245 / 3e-78 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G40900 243 / 2e-77 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G37460 243 / 2e-77 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 239 / 9e-76 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G08300 234 / 4e-74 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G43650 231 / 4e-73 nodulin MtN21 /EamA-like transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G068300 [exp] 286 / 2e-94 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.006G033500 [exp] 273 / 7e-89 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G192100 [exp] 270 / 3e-88 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.016G031400 [exp] 269 / 3e-87 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 265 / 3e-86 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 265 / 1e-85 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 264 / 4e-85 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G040200 [exp] 258 / 1e-83 AT1G44800 261 / 1e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.019G004100 [exp] 255 / 2e-82 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008706 [exp] 271 / 3e-88 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 269 / 2e-87 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 268 / 1e-86 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 267 / 2e-86 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 268 / 2e-85 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10028030 [exp] 256 / 2e-82 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 256 / 2e-82 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 248 / 3e-79 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10027251 [exp] 248 / 5e-79 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10038959 [exp] 246 / 7e-79 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.011G148400.4 pacid=42780940 polypeptide=Potri.011G148400.4.p locus=Potri.011G148400 ID=Potri.011G148400.4.v4.1 annot-version=v4.1 ATGCAAGCCTGTGCTCCATATGCAGCGATGTTACTAGTTCAATTCGCTTATGGAGGATCTAATATCCTCATGAAAATTGCTCTTGAGAAGGGACTCAATC AAATAGTATTTGTGGTTTACCGTCATGTCATTGCAGTGATTTTGTTGGGCCCTTTTGCTTATGTAATTGAAAGGAAGCAGCGCCCTTCGCTTTCATTGTC AGTGATCATAAAGATTTTTGTGCTTTCATCACTAGGAACTACCATCCATCTTAATGTTTACTATGCTGGTTTAGCATACACTTCTCCGACAGTTGCAAGC GCGTTGAGTAATGTTATCCCGAGCTTGACATTCATCATGGCAGTTTTACTCGGGATGGAGAAAGTGAAGACTGAAAGCCCTAGAGGATGGGCGAAAATGT TGGGCACGACTATTTGCATAAGTGGCTCTCTGGTTTTTACCTTCTGGAAAGGAGGATATCTGTTTAAAAGTTTTGAGAACAGAGCATTAATAAACATCTA TAGCACCAAAGGTTCTGCTGGTGAATACATGCATGCTAAAGAAAACTGGATTAAAGGTTCTGCACTTATTCTTACCAGTCATGTTGCGTGGAGTGCATGG CTAATTCTCCAGGCTGTGGTTTACAAAGTCTATCCAGCTCGTTTATCGCTGAACACTTTGATTTGCTTCTTCGCATCAATCCAATCTTCTTTTCTTGCGC TGTTTTTTGCAAGAACTACTGCAATATGGAAGCTGGACTGGAATGTGCAGCTCCTGACCATTATATACTGTGGAGTTGTGATCTCAGCATTAGGCTACTA CCTGCAAACCTGGTGTATTAGTCACAAGGGGCCAGTTTTTGTAGCTATGTTTAGTCCACTACTAGTTGTCATTGTTGGACTATTCTCAGCATTTGCATTT GCGGAGAGACTTCATTTGGGCAGCTTGATTGGAACAGGTCTCATTGTAGTGGGTCTCTACTGTGTACTGTGGGGTAAAAGGCAAGACAATAGCGCTGCTC AGAAGCCTGATGAAGGAAGAGGCTTGGCTAATGGTAAAACAATGGAAATTTCCATAAATGACTACCCATTGACAAATCCTGACACAAGCGGAAGGAAGTG A
AA sequence Show only first row Show all	>Potri.011G148400.4 pacid=42780940 polypeptide=Potri.011G148400.4.p locus=Potri.011G148400 ID=Potri.011G148400.4.v4.1 annot-version=v4.1 MQACAPYAAMLLVQFAYGGSNILMKIALEKGLNQIVFVVYRHVIAVILLGPFAYVIERKQRPSLSLSVIIKIFVLSSLGTTIHLNVYYAGLAYTSPTVAS ALSNVIPSLTFIMAVLLGMEKVKTESPRGWAKMLGTTICISGSLVFTFWKGGYLFKSFENRALINIYSTKGSAGEYMHAKENWIKGSALILTSHVAWSAW LILQAVVYKVYPARLSLNTLICFFASIQSSFLALFFARTTAIWKLDWNVQLLTIIYCGVVISALGYYLQTWCISHKGPVFVAMFSPLLVVIVGLFSAFAF AERLHLGSLIGTGLIVVGLYCVLWGKRQDNSAAQKPDEGRGLANGKTMEISINDYPLTNPDTSGRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07050			nodulin MtN21 /EamA-like trans...		Potri.011G148400 [exp]	0	1
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Potri.010G084300 [exp]	1.00	0.9273
					Potri.001G141701 [exp]	4.47	0.8917
AT3G43630			Vacuolar iron transporter (VIT...		Potri.002G069400 [exp]	9.00	0.8764
AT2G22420			Peroxidase superfamily protein...		Potri.007G096200 [exp]	11.40	0.8163
AT2G37900			Major facilitator superfamily ...		Potri.016G103500 [exp]	13.22	0.7774
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G031000 [exp]	15.87	0.7961
AT3G25400			unknown protein		Potri.008G168700 [exp]	16.43	0.7753
					Potri.001G379400 [exp]	19.41	0.8089
AT1G43650			nodulin MtN21 /EamA-like trans...		Potri.005G192100 [exp]	24.81	0.8256
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Potri.002G033000 [exp]	25.03	0.7932	Pt-CYP722.2

Compare expression of checked genes

Potri.011G148400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.