Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64700 219 / 1e-68 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G43650 209 / 3e-65 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT5G07050 187 / 5e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G09380 184 / 3e-55 nodulin MtN21 /EamA-like transporter family protein (.1) AT2G39510 182 / 3e-54 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G44800 179 / 2e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 177 / 2e-52 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G75500 177 / 3e-52 WAT1 Walls Are Thin 1 (.1.2) AT2G40900 176 / 1e-51 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 173 / 5e-51 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G192100 [exp] 246 / 3e-79 AT1G43650 305 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.002G068300 [exp] 244 / 2e-78 AT1G43650 360 / 6e-124 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.001G307800 [exp] 219 / 1e-68 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.019G004100 [exp] 218 / 2e-68 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G148400 [exp] 211 / 1e-65 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G085100 [exp] 196 / 1e-59 AT1G21890 481 / 2e-170 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 194 / 4e-59 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G082700 [exp] 186 / 2e-56 AT2G37460 488 / 4e-174 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G176200 [exp] 187 / 5e-56 AT4G08300 465 / 2e-164 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028030 [exp] 205 / 3e-63 AT4G08300 455 / 8e-161 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10003738 [exp] 204 / 7e-63 AT4G08300 453 / 6e-160 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10018889 [exp] 202 / 2e-62 AT1G43650 372 / 1e-128 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028585 [exp] 197 / 2e-60 AT1G43650 364 / 1e-125 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10028586 [exp] 201 / 3e-59 AT1G43650 314 / 2e-102 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10026112 [exp] 197 / 1e-58 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 192 / 4e-58 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 191 / 1e-57 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 190 / 3e-57 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10024424 [exp] 189 / 1e-56 AT2G37460 486 / 2e-172 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.011G148600.1 pacid=42780643 polypeptide=Potri.011G148600.1.p locus=Potri.011G148600 ID=Potri.011G148600.1.v4.1 annot-version=v4.1 ATGACTTTCATTCAGTTTGGTTTTGCAGGGATGACCTTAATATCAAAGGCAGCGCTAAATGCTGGGATGAACCCTTTAGTGTTCAATGCCTATCGGCAAA TGATTGCCACACTTGTGTTGGCACTCCTTGTTCTCTTGATGGAGAGGAAGAAGAGCGGATCGGTGTCATTCAGCCTCTTCTGCAAGATTTTTGTGGCTGC TTTATTAGGGCCAACATTGAGCTTGGATCTATACTACGTAGCGCTCCATTTAACCTCAGCAACATTTGCAGCTGCTATTCTCAATTCCATTCCAGTTGTC ACATTTTTCTTAGCTATCATTATGGGGTTGGAGGCTGTAGGTTGGAGATCATTCTATGGTGGACTAAAGATCCTTGGAATAGTCATAACTGTTGGAGGAG CCATGCTGCTTAGCTTCTACCGAAGACCTTCGACGAGACATCCTAACTCACCAAGTCCTGGCAGCAACGATGGAACATTCTTTGTTAATAAATTGGAGGG TAGAACGAGATTGATCTTAGGACCTGTTCTAATGTTCCTTTCTGCCATAGCTTGGTCAACATGGCTTGTCGTTCAATCAAAATTGCTGGAGCTTTATCCA GCCAGGTTACGCCTCTCCACTCTACAGTGTCTCATCGGTTCTGTGCAATCTACTATTATAGCTGCAGCCTTGGAGCGAGAACGTAACTCATGGAAGATAA GATGGGATATTCAACTTGCTTCCCTTGCGTATTGTGGTGTATTCGTAACTGGGGCTGCATATGGACTCCAAATTTGGTGTATAGAGAAGAAAGGGCCGTT TTACGTTTCCATGTTTTCTCCACTTGCATTGCTTTTAACTGCCATCTTCTCAGCAATTTTATGGGCTGAACGATTGAACTGGCAAAGTATATTGGGAGGC ATTCTGATTGTTGGAGGTCTTTATGGTGTCCTGTGGGGAAGAAGCAAGGCTGAGAAACAAGAAATACATAATGGTGAATCTCCAGATATTGAAAAACACT GA
AA sequence Show only first row Show all	>Potri.011G148600.1 pacid=42780643 polypeptide=Potri.011G148600.1.p locus=Potri.011G148600 ID=Potri.011G148600.1.v4.1 annot-version=v4.1 MTFIQFGFAGMTLISKAALNAGMNPLVFNAYRQMIATLVLALLVLLMERKKSGSVSFSLFCKIFVAALLGPTLSLDLYYVALHLTSATFAAAILNSIPVV TFFLAIIMGLEAVGWRSFYGGLKILGIVITVGGAMLLSFYRRPSTRHPNSPSPGSNDGTFFVNKLEGRTRLILGPVLMFLSAIAWSTWLVVQSKLLELYP ARLRLSTLQCLIGSVQSTIIAAALERERNSWKIRWDIQLASLAYCGVFVTGAAYGLQIWCIEKKGPFYVSMFSPLALLLTAIFSAILWAERLNWQSILGG ILIVGGLYGVLWGRSKAEKQEIHNGESPDIEKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.011G148600 [exp]	0	1
AT5G48540			receptor-like protein kinase-r...		Potri.002G249600 [exp]	3.00	0.7914
AT3G22060			Receptor-like protein kinase-r...		Potri.007G120700 [exp]	3.00	0.7707
AT1G02630			Nucleoside transporter family ...		Potri.018G130200 [exp]	4.00	0.7811
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.019G034800 [exp]	6.92	0.7089	Pt-GDH1.1
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.002G138900 [exp]	11.83	0.7612
AT3G07360		ATPUB9	ARABIDOPSIS THALIANA PLANT U-B...		Potri.013G052500 [exp]	11.83	0.6138
AT5G20480		EFR	EF-TU receptor (.1)		Potri.005G031700 [exp]	19.74	0.6632
AT1G02630			Nucleoside transporter family ...		Potri.018G130000 [exp]	20.78	0.7077
AT2G44745	WRKY	WRKY12	WRKY family transcription fact...		Potri.014G050000 [exp]	21.97	0.7196
AT5G15710			Galactose oxidase/kelch repeat...		Potri.004G112400 [exp]	22.49	0.6402

Compare expression of checked genes

Potri.011G148600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.